Co-expression analysis

Gene ID	Zm.9745.1.A1_at
Gene name
Homology with Arabidopsis	Similar to At5g24570: unknown protein (HF=2e+1)
Module size	6 genes
NF	0.62
%ile	83.2

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.57	75.1	0.94	Zm.9745.1.A1_at	BM341408	-	-	2e+1	At5g24570	unknown protein	O.I.	H.G.	S.X.	Please select
0.73	89.9	0.95	Zm.652.1.S1_at	AY029559.1	methyl binding domain	-	2e-1	At5g17870	PSRP6 (PLASTID-SPECIFIC 50S RIBOSOMAL PROTEIN 6)	O.I.	H.G.	S.X.	Please select
0.67	85.8	0.94	Zm.1079.6.A1_at	CF634247	carbonic anhydrase	-	5e-1	At1g56550	UDP-xylosyltransferase	O.I.	H.G.	S.X.	Please select
0.67	85.8	0.95	Zm.6364.1.S1_at	T20372	-	-	8e-1	At2g22060	-	O.I.	H.G.	S.X.	Please select
0.47	59.9	0.94	Zm.15780.1.A1_at	CD484576	-	-	4e+0	At3g01472	CPuORF33 (Conserved peptide upstream open reading frame 33)	O.I.	H.G.	S.X.	Please select
0.47	59.9	0.94	Zm.19028.1.S1_at	T18786	hypothetical protein LOC100192863	-	4e-2	At4g19270	unknown protein	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
14.7	98.9	GSM320448	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
13.1	98.7	GSM320447	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
13.0	98.7	GSM320449	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
8.9	98.2	GSM320455	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
8.4	98.1	GSM320453	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
7.5	97.8	GSM320451	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
7.2	97.8	GSM320454	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
7.0	97.7	GSM320450	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
6.9	97.7	GSM320452	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
5.2	96.9	GSM162267	Mutant 1 with array type maize from Affymetrix	GSE7030	Phenotypic and molecular characterisation of a novel Bt2 allele in maize

Inter-species module comparison

A co-expression module including the barley gene, Contig17181_at, orthologous to the query gene, Zm.9745.1.A1_at

VF	%ile	Gene ID	Repr. ID	Gene Name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.91	98.1	Contig17181_at	At5g24570	-	-	6e-4	At5g39590	-	O.I.	H.G.	S.X.	Please select
0.60	77.3	Contig15685_at	At5g24570	-	-	7e-1	At1g23780	F-box family protein	O.I.	H.G.	S.X.	Please select
0.43	56.4	Contig17010_at	At5g24570	-	-	1e-7	At2g27880	AGO5 (ARGONAUTE 5)	O.I.	H.G.	S.X.	Please select
0.40	53.1	Contig10730_at	At5g24570	-	-	9e-2	At1g25425	CLE43 (CLAVATA3/ESR-RELATED 43)	O.I.	H.G.	S.X.	Please select
0.32	40.3	Contig7115_at	At5g24570	-	-	9e-1	At5g51100	FSD2 (FE SUPEROXIDE DISMUTASE 2)	O.I.	H.G.	S.X.	Please select
0.27	32.1	Contig25993_at	At5g24570	-	-	6e-2	At2g36640	ATECP63 (EMBRYONIC CELL PROTEIN 63)	O.I.	H.G.	S.X.	Please select

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Vitis_vinifera

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