CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID Zm.9745.1.A1_at

Gene name
Homology with Arabidopsis Similar to At5g24570: unknown protein (HF=2e+1)

Module size 6 genes

NF 0.62

%ile 83.2

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.57 75.1 0.94 Zm.9745.1.A1_at BM341408 - - 2e+1 At5g24570 unknown protein O.I. H.G. S.X.
0.73 89.9 0.95 Zm.652.1.S1_at AY029559.1 methyl binding domain - 2e-1 At5g17870 PSRP6 (PLASTID-SPECIFIC 50S RIBOSOMAL PROTEIN 6) O.I. H.G. S.X.
0.67 85.8 0.94 Zm.1079.6.A1_at CF634247 carbonic anhydrase - 5e-1 At1g56550 UDP-xylosyltransferase O.I. H.G. S.X.
0.67 85.8 0.95 Zm.6364.1.S1_at T20372 - - 8e-1 At2g22060 - O.I. H.G. S.X.
0.47 59.9 0.94 Zm.15780.1.A1_at CD484576 - - 4e+0 At3g01472 CPuORF33 (Conserved peptide upstream open reading frame 33) O.I. H.G. S.X.
0.47 59.9 0.94 Zm.19028.1.S1_at T18786 hypothetical protein LOC100192863 - 4e-2 At4g19270 unknown protein O.I. H.G. S.X.

Click More genes

Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
14.7 98.9 GSM320448 protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2 GSE12770 Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
13.1 98.7 GSM320447 protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1 GSE12770 Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
13.0 98.7 GSM320449 protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3 GSE12770 Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
8.9 98.2 GSM320455 protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3 GSE12770 Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
8.4 98.1 GSM320453 protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1 GSE12770 Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
7.5 97.8 GSM320451 protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2 GSE12770 Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
7.2 97.8 GSM320454 protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2 GSE12770 Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
7.0 97.7 GSM320450 protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1 GSE12770 Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
6.9 97.7 GSM320452 protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3 GSE12770 Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
5.2 96.9 GSM162267 Mutant 1 with array type maize from Affymetrix GSE7030 Phenotypic and molecular characterisation of a novel Bt2 allele in maize

Inter-species module comparison

A co-expression module including the Arabidopsis gene, At5g24570, orthologous to the query gene, Zm.9745.1.A1_at

VF %ile Gene ID Repr. ID Gene Name Func. O.I. H.G. S.X. Other DB
1.00 100.0 At5g24570 832528 unknown protein F:molecular_function unknown;P:biological_process unknown;C:unknown;P O.I. H.G. S.X.
0.33 38.1 At3g16370 820884 GDSL-motif lipase/hydrolase family protein F:hydrolase activity, acting on ester bonds, carboxylesterase activity;P:lipid metabolic process;C:apoplast;PBFOM O.I. H.G. S.X.
0.29 30.3 At2g06850 815247 EXGT-A1 (ENDOXYLOGLUCAN TRANSFERASE) endoxyloglucan transferase (EXGT-A1) gene O.I. H.G. S.X.
0.26 24.4 At5g43760 834398 KCS20 (3-KETOACYL-COA SYNTHASE 20) Encodes KCS20, a member of the 3-ketoacyl-CoA synthase family involved in the biosynthesis of VLCFA (very long chain fatty acids). O.I. H.G. S.X.
0.22 17.5 At1g32410 840134 vacuolar protein sorting 55 family protein / VPS55 family protein F:transporter activity;P:transport;C:vacuole;MFPO O.I. H.G. S.X.
0.21 15.8 At2g26250 817165 KCS10 (3-KETOACYL-COA SYNTHASE 10) epidermis-specific, encodes KCS10, a putative 3-ketoacyl-CoA synthase. probably involved in the synthesis of long-chain lipids found in the cuticle. O.I. H.G. S.X.
0.21 15.8 At3g43720 823481 protease inhibitor/seed storage/lipid transfer protein (LTP) family protein F:lipid binding;P:lipid transport;C:anchored to membrane, membrane;P O.I. H.G. S.X.
0.20 14.4 At1g61900 842486 unknown protein F:molecular_function unknown;P:biological_process unknown;C:anchored to plasma membrane, plasma membrane, anchored to membrane;P O.I. H.G. S.X.
0.20 14.4 At1g51500 841575 CER5 (ECERIFERUM 5) Encodes an ABC transporter involved in cuticular wax biosynthesis. Lines carrying recessive mutations in this locus have weakly glaucous stem surface, and relative elevated secondary alcohols and ketones. O.I. H.G. S.X.
0.18 11.4 At3g26520 822259 TIP2 (TONOPLAST INTRINSIC PROTEIN 2) gamma tonoplast intrinsic protein 2 (TIP2). expressed throughout the plant and transcript level is increased upon NaCl or ABA treatments. NaCl stress-sensitive yeast mutant strains exhibit more resistance to salt when expressing this protein. O.I. H.G. S.X.
0.17 10.2 At2g20230 816542 - F:unknown;P:unknown;C:plasma membrane, vacuole;PO O.I. H.G. S.X.
0.17 10.2 At1g55330 841979 AGP21 Encodes a putative arabinogalactan-protein (AGP21). O.I. H.G. S.X.
0.16 8.8 At4g38250 829982 amino acid transporter family protein F:amino acid transmembrane transporter activity;P:amino acid transport;C:membrane;MPFOBAV O.I. H.G. S.X.
0.16 8.8 At1g05810 837091 RABA5E (RAB GTPASE HOMOLOG A5E) F:GTP binding;P:protein transport, small GTPase mediated signal transduction;C:chloroplast;MOFPBVA O.I. H.G. S.X.
0.09 2.8 At1g12090 837761 ELP (EXTENSIN-LIKE PROTEIN) extensin-like protein (ELP) O.I. H.G. S.X.
0.09 2.8 At4g10810 826677 unknown protein F:molecular_function unknown;P:biological_process unknown;C:chloroplast;P O.I. H.G. S.X.
0.08 2.3 At5g20650 832188 COPT5 encodes a member of copper transporter family and functionally complements a high affinity copper transporter mutant in yeast O.I. H.G. S.X.

Select a plant to compare co-expressed genes between species.
Glycine_max
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera

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