Co-expression analysis

Gene ID	Zm.968.1.A1_at
Gene name	GTP-binding protein PTD004
Homology with Arabidopsis	Similar to At1g30580: GTP binding (HF=5e-27)
Module size	6 genes
NF	0.19
%ile	14.2

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.40	48.5	0.89	Zm.968.1.A1_at	CF623311	GTP-binding protein PTD004	-	5e-27	At1g30580	GTP binding	O.I.	H.G.	S.X.	Please select
0.43	52.8	0.90	Zm.14843.1.S1_at	BI675128	hypothetical protein LOC100276290	-	7e-2	At5g03345	-	O.I.	H.G.	S.X.	Please select
0.21	15.5	0.90	Zm.16327.1.S1_at	AI941785	Hypothetical protein LOC100216593	-	9e-7	At1g07770	RPS15A (ribosomal protein s15a)	O.I.	H.G.	S.X.	Please select
0.17	10.6	0.92	Zm.10760.1.S1_at	BQ539428	hypothetical protein LOC100277122	-	9e-12	At1g33230	-	O.I.	H.G.	S.X.	Please select
0.12	5.9	0.90	Zm.5669.1.A1_at	AI629879	peroxisomal membrane carrier protein	-	1e-2	At2g39970	peroxisomal membrane protein (PMP36)	O.I.	H.G.	S.X.	Please select
0.09	4.0	0.91	Zm.4469.1.S1_at	AI734281	hypothetical protein LOC100277258	-	6e+0	At4g25200	ATHSP23.6-MITO (MITOCHONDRION-LOCALIZED SMALL HEAT SHOCK PROTEIN 23.6)	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
11.2	98.5	GSM320452	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
11.1	98.5	GSM320447	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
7.5	97.8	GSM320450	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
6.1	97.4	GSM320455	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
5.5	97.1	GSM253275	ZM_8d_Mock_3inf_II	GSE10023	Maize gene expression during infection with Ustilago maydis
5.5	97.1	GSM320451	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
5.2	96.9	GSM320448	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
5.1	96.8	GSM320468	protocol: Amplified fragment restriction polymorphism (AFLP) - genotype: Mo17 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
4.7	96.5	GSM320449	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
4.7	96.5	GSM253274	ZM_8d_Mock_3inf_I	GSE10023	Maize gene expression during infection with Ustilago maydis

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Vitis_vinifera

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