Co-expression analysis

Gene ID	Zm.9675.1.A1_at
Gene name	chitinase 2
Homology with Arabidopsis	Similar to At1g62250: unknown protein (HF=5e+0)
Module size	20 genes
NF	0.41
%ile	46.3

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.62	79.8	0.95	Zm.9675.1.A1_at	BM335265	chitinase 2	-	5e+0	At1g62250	unknown protein	O.I.	H.G.	S.X.	Please select
0.52	67.3	0.96	Zm.343.1.S1_at	CB603836	outer cell layer2	-	6e-3	At4g00730	ANL2 (ANTHOCYANINLESS 2)	O.I.	H.G.	S.X.	Please select
0.50	65.7	0.97	Zm.2134.1.A1_at	AI734434	-	-	9e-2	At2g41780	unknown protein	O.I.	H.G.	S.X.	Please select
0.47	59.9	0.97	Zm.19066.1.S1_at	CD975063	-	-	1e-37	At2g02000	GAD3 (glutamate decarboxylase 3)	O.I.	H.G.	S.X.	Please select
0.45	56.4	0.97	Zm.13543.1.A1_at	AY108273.1	-	-	2e-22	At1g63160	replication factor C 40 kDa, putative	O.I.	H.G.	S.X.	Please select
0.44	55.7	0.97	Zm.17497.1.A1_at	BG266429	hypothetical protein LOC100273930	-	3e+0	Atmg00140	-	O.I.	H.G.	S.X.	Please select
0.42	51.3	0.96	Zm.7976.1.S1_at	BM080696	hypothetical protein LOC100217261	-	2e-46	At5g37680	ATARLA1A (ADP-ribosylation factor-like A1A)	O.I.	H.G.	S.X.	Please select
0.42	51.3	0.96	Zm.1417.3.A1_a_at	CF010509	-	-	8e-2	At4g34960	peptidyl-prolyl cis-trans isomerase, putative / cyclophilin, putative / rotamase, putative	O.I.	H.G.	S.X.	Please select
0.41	49.7	0.97	Zm.749.1.S1_at	AY291061.1	photosystem II subunit PsbS1	-	8e-7	At1g44575	NPQ4 (NONPHOTOCHEMICAL QUENCHING)	O.I.	H.G.	S.X.	Please select
0.40	48.5	0.97	Zm.13681.1.S1_at	AY106895.1	hypothetical protein LOC100191679	-	4e-10	At1g12370	PHR1 (PHOTOLYASE 1)	O.I.	H.G.	S.X.	Please select
0.38	44.2	0.97	Zm.15576.1.A1_a_at	CK827910	-	-	3e-1	At5g01860	zinc finger (C2H2 type) family protein	O.I.	H.G.	S.X.	Please select
0.37	42.3	0.97	Zm.6049.3.A1_a_at	AI734480	phosphatidylinositol transporter/ transporter	-	3e-3	At1g76640	calmodulin-related protein, putative	O.I.	H.G.	S.X.	Please select
0.36	41.3	0.97	Zm.6146.1.A1_at	CD989568	brassinosteroid biosynthesis-like protein	-	1e-40	At3g19820	DWF1 (DWARF 1)	O.I.	H.G.	S.X.	Please select
0.36	41.3	0.97	Zm.5960.1.A1_at	AI665953	hypothetical protein LOC100277799	-	1e+1	At5g65158	-	O.I.	H.G.	S.X.	Please select
0.33	36.0	0.97	Zm.3429.1.A1_at	CF629484	UV-induced protein uvi31	-	6e+0	At5g12980	rcd1-like cell differentiation protein, putative	O.I.	H.G.	S.X.	Please select
0.33	36.0	0.97	Zm.18446.1.A1_at	CO518758	-	-	3e-2	At1g29800	phosphoinositide binding / zinc ion binding	O.I.	H.G.	S.X.	Please select
0.32	33.4	0.96	Zm.13310.1.S1_at	CA827497	-	-	2e-5	At1g65660	SMP1 (SWELLMAP 1)	O.I.	H.G.	S.X.	Please select
0.32	33.4	0.97	ZmAffx.1025.1.A1_at	AI770423	-	-	8e-1	At2g25312	-	O.I.	H.G.	S.X.	Please select
0.31	31.6	0.96	Zm.2762.1.A1_at	AW067127	late embryogenesis abundant protein, group 3	-	5e+0	At3g02480	ABA-responsive protein-related	O.I.	H.G.	S.X.	Please select
0.26	22.7	0.97	Zm.7679.1.A1_at	BM079456	hypothetical protein LOC100273504	-	3e-12	At5g19820	emb2734 (embryo defective 2734)	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
20.7	99.4	GSM320447	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
19.4	99.3	GSM162264	Mutant 2 with array type maize from Affymetrix	GSE7030	Phenotypic and molecular characterisation of a novel Bt2 allele in maize
16.8	99.1	GSM320451	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
15.8	99.0	GSM320449	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
14.8	98.9	GSM320448	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
9.4	98.3	GSM320450	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
9.3	98.2	GSM320452	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
8.3	98.0	GSM162266	Wild type 2 with array type maize from Affymetrix	GSE7030	Phenotypic and molecular characterisation of a novel Bt2 allele in maize
8.1	98.0	GSM162267	Mutant 1 with array type maize from Affymetrix	GSE7030	Phenotypic and molecular characterisation of a novel Bt2 allele in maize
6.4	97.5	GSM320455	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Vitis_vinifera

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