Co-expression analysis

Gene ID	Zm.9667.1.A1_at
Gene name	transcription factor MYB42
Homology with Arabidopsis	Similar to At3g48490: unknown protein (HF=1e+0)
Module size	19 genes
NF	0.23
%ile	18.1

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.61	79.5	0.93	Zm.9667.1.A1_at	BM341541	transcription factor MYB42	-	1e+0	At3g48490	unknown protein	O.I.	H.G.	S.X.	Please select
0.52	67.3	0.94	Zm.18082.1.S1_at	BQ486521	hypothetical protein LOC100277280	-	7e-1	At2g39440	-	O.I.	H.G.	S.X.	Please select
0.40	48.5	0.96	Zm.15436.1.S1_at	CD437346	-	-	2e+0	At5g37750	heat shock protein binding / unfolded protein binding	O.I.	H.G.	S.X.	Please select
0.38	44.2	0.95	Zm.9319.1.A1_at	CF627080	hypothetical protein LOC100216855	-	2e+0	At5g10000	ATFD4 (ferredoxin 4)	O.I.	H.G.	S.X.	Please select
0.35	38.9	0.94	Zm.8565.1.S1_at	CO528893	hypothetical protein LOC100279882	-	8e-7	At2g01110	APG2 (ALBINO AND PALE GREEN 2)	O.I.	H.G.	S.X.	Please select
0.32	33.4	0.94	Zm.9405.1.A1_at	BM336416	-	-	1e-1	At1g54970	ATPRP1 (PROLINE-RICH PROTEIN 1)	O.I.	H.G.	S.X.	Please select
0.32	33.4	0.95	Zm.15276.1.A1_at	BM379849	-	-	3e-3	At1g12665	-	O.I.	H.G.	S.X.	Please select
0.29	28.1	0.96	Zm.15903.1.S1_at	L77912.1	phenylalanine ammonia-lyase	-	2e-14	At3g10340	PAL4 (Phenylalanine ammonia-lyase 4)	O.I.	H.G.	S.X.	Please select
0.29	28.1	0.93	Zm.12318.1.A1_at	AY111626.1	pre-mRNA processing factor	-	1e-3	At5g38600	proline-rich spliceosome-associated (PSP) family protein / zinc knuckle (CCHC-type) family protein	O.I.	H.G.	S.X.	Please select
0.28	28.1	0.93	Zm.7151.1.A1_at	BM339369	-	-	3e-9	At1g72330	ALAAT2 (ALANINE AMINOTRANSFERASE 2)	O.I.	H.G.	S.X.	Please select
0.27	24.6	0.97	Zm.8563.1.A1_at	BM336306	hypothetical protein LOC100193983	-	9e-15	At1g23110	unknown protein	O.I.	H.G.	S.X.	Please select
0.22	16.9	0.95	Zm.187.1.S1_at	CK370048	anionic peroxidase	-	1e-5	At5g40150	peroxidase, putative	O.I.	H.G.	S.X.	Please select
0.18	11.6	0.97	ZmAffx.549.1.S1_at	AI712143	-	-	3e+0	At1g22067	unknown protein	O.I.	H.G.	S.X.	Please select
0.15	8.6	0.97	Zm.8772.1.A1_at	CF018678	hypothetical protein LOC100192757	-	2e-38	At5g54080	HGO (HOMOGENTISATE 1,2-DIOXYGENASE)	O.I.	H.G.	S.X.	Please select
0.14	7.7	0.95	ZmAffx.921.1.A1_at	AI795295	-	-	3e+0	At3g15900	unknown protein	O.I.	H.G.	S.X.	Please select
0.13	6.8	0.94	Zm.17367.1.A1_at	CF637207	protein Mo25	-	4e-4	At5g18940	Mo25 family protein	O.I.	H.G.	S.X.	Please select
0.12	5.9	0.94	ZmAffx.799.1.A1_at	AI770347	-	-	5e-2	At1g75080	BZR1 (BRASSINAZOLE-RESISTANT 1)	O.I.	H.G.	S.X.	Please select
0.12	5.9	0.94	Zm.13926.1.A1_at	U41080.1	-	-	7e-1	At3g24506	unknown protein	O.I.	H.G.	S.X.	Please select
0.11	5.3	0.96	Zm.4295.1.A1_at	AI834391	universal stress protein family protein	-	4e-2	At1g44760	universal stress protein (USP) family protein	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
11.0	98.5	GSM320447	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
10.4	98.4	GSM320449	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
10.2	98.4	GSM320448	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
10.2	98.4	GSM320454	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
10.2	98.4	GSM320453	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
9.8	98.3	GSM320455	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
7.6	97.9	GSM320450	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
7.2	97.8	GSM320451	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
6.9	97.7	GSM320452	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
4.5	96.3	GSM253280	ZM_8d_SG200_3Alu_I	GSE10023	Maize gene expression during infection with Ustilago maydis

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Vitis_vinifera

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