Co-expression analysis

Gene ID	Zm.965.1.S1_at
Gene name	hypothetical protein LOC100277149
Homology with Arabidopsis	Similar to At1g80890: unknown protein (HF=3e-4)
Module size	6 genes
NF	0.30
%ile	27.5

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.40	48.5	0.77	Zm.965.1.S1_at	CA828949	hypothetical protein LOC100277149	-	3e-4	At1g80890	unknown protein	O.I.	H.G.	S.X.	Please select
0.46	58.4	0.79	Zm.6711.1.A1_at	AY104120.1	transcription initiation factor IIA gamma chain	-	4e-29	At4g24440	transcription initiation factor IIA gamma chain / TFIIA-gamma (TFIIA-S)	O.I.	H.G.	S.X.	Please select
0.44	55.7	0.83	Zm.1907.1.S1_at	AW498080	-	-	1e+0	At2g29410	MTPB1 (METAL TOLERANCE PROTEIN B1)	O.I.	H.G.	S.X.	Please select
0.40	48.5	0.83	Zm.11810.1.A1_at	BM380912	-	-	7e-2	At3g21770	peroxidase 30 (PER30) (P30) (PRXR9)	O.I.	H.G.	S.X.	Please select
0.23	18.6	0.84	Zm.9681.1.A1_at	BM339116	-	-	5e+0	At4g29735	unknown protein	O.I.	H.G.	S.X.	Please select
0.10	4.6	0.77	Zm.18252.1.A1_at	CF629317	-	-	5e-1	At3g25420	scpl21 (serine carboxypeptidase-like 21)	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
9.0	98.2	GSM320453	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
8.2	98.0	GSM320454	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
8.1	98.0	GSM320455	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
7.0	97.7	GSM320447	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
6.8	97.6	GSM320448	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
6.6	97.6	GSM320452	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
6.0	97.3	GSM320449	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
5.6	97.1	GSM320451	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
5.1	96.8	GSM320450	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
3.0	94.0	GSM290554	WS2 with array type maize from Affymetrix	GSE11531	Downregulation of cinnamoyl-coenzyme A reductase in maize (affy_ccr_maize)

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Vitis_vinifera

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