Co-expression analysis

Gene ID	Zm.9645.1.S1_at
Gene name	ZmMybst1
Homology with Arabidopsis	Similar to At3g16350: myb family transcription factor (HF=1e-8)
Module size	6 genes
NF	0.69
%ile	91.1

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.77	92.1	0.97	Zm.9645.1.S1_at	AY207047.1	ZmMybst1	-	1e-8	At3g16350	myb family transcription factor	O.I.	H.G.	S.X.	Please select
0.83	95.6	0.97	Zm.515.1.S1_at	AF273767.1	protoporphyrinogen IX oxidase	-	4e-3	At5g14220	HEMG2	O.I.	H.G.	S.X.	Please select
0.80	94.0	0.97	Zm.18083.1.A1_at	BU079763	-	-	1e-17	At2g38670	PECT1 (PHOSPHORYLETHANOLAMINE CYTIDYLYLTRANSFERASE 1)	O.I.	H.G.	S.X.	Please select
0.77	92.1	0.97	Zm.19362.1.S1_at	AY111241.1	-	-	1e+0	At5g13440	ubiquinol-cytochrome C reductase iron-sulfur subunit, mitochondrial, putative / Rieske iron-sulfur protein, putative	O.I.	H.G.	S.X.	Please select
0.55	71.6	0.97	Zm.1960.1.A1_at	AW566154	palmitoyltransferase swf1	-	4e-1	At3g04970	zinc finger (DHHC type) family protein	O.I.	H.G.	S.X.	Please select
0.36	41.3	0.97	Zm.1974.1.A1_at	CF920129	-	-	2e+1	At5g36100	unknown protein	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
11.8	98.6	GSM320443	protocol: mRNA - genotype: Mo17 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
3.4	94.9	GSM385709	Deep-sowing 10d treatment TIBA, biological rep1	GSE15371	Auxin-induced gene expression in mesocotyl elongation of maize inbred line 3681-4 tolerant to deep-sowing
3.0	94.0	GSM162267	Mutant 1 with array type maize from Affymetrix	GSE7030	Phenotypic and molecular characterisation of a novel Bt2 allele in maize
2.6	92.9	GSM375788	Deep-sowing 10d treatment Control, biological rep1	GSE15048	Gibberellin-induced gene expression in maize mesocotyl under deep-sowing condition
2.3	91.7	GSM320446	protocol: mRNA - genotype: CML69 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
2.1	90.8	GSM320452	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
2.1	90.8	GSM290554	WS2 with array type maize from Affymetrix	GSE11531	Downregulation of cinnamoyl-coenzyme A reductase in maize (affy_ccr_maize)
2.0	90.2	GSM320438	protocol: mRNA - genotype: B73 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
2.0	90.2	GSM320439	protocol: mRNA - genotype: B73 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
1.9	89.6	GSM320453	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes

Inter-species module comparison

A co-expression module including the grape gene, 1622519_at, orthologous to the query gene, Zm.9645.1.S1_at

VF	%ile	Gene ID	Repr. ID	Gene Name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.77	92.3	1622519_at	At3g16350	hypothetical protein LOC100253962	-	2e-8	At5g47390	myb family transcription factor	O.I.	H.G.	S.X.	Please select
0.47	67.7	1607166_at	At3g16350	hypothetical protein LOC100254901	-	2e+1	Atmg00730	-	O.I.	H.G.	S.X.	Please select
0.40	57.7	1618057_at	At3g16350	hypothetical protein LOC100265221	-	4e+0	At5g49410	unknown protein	O.I.	H.G.	S.X.	Please select
0.40	57.7	1617241_at	At3g16350	hypothetical protein LOC100254322	-	5e+0	At5g48530	unknown protein	O.I.	H.G.	S.X.	Please select
0.30	39.4	1619344_s_at	At3g16350	hypothetical protein LOC100248250	-	2e+0	At3g51730	saposin B domain-containing protein	O.I.	H.G.	S.X.	Please select
0.29	37.7	1613951_at	At3g16350	hypothetical protein LOC100242676	-	1e-13	At3g06350	MEE32 (MATERNAL EFFECT EMBRYO ARREST 32)	O.I.	H.G.	S.X.	Please select

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

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