CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID Zm.9621.1.A1_at

Gene name ethylene-responsive transcription factor 3
Homology with Arabidopsis Similar to At1g69490: NAP (NAC-like, activated by AP3/PI) (HF=4e+0)

Module size 6 genes

NF 0.48

%ile 61.2

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.83 95.6 0.97 Zm.9621.1.A1_at BM333959 ethylene-responsive transcription factor 3 - 4e+0 At1g69490 NAP (NAC-like, activated by AP3/PI) O.I. H.G. S.X.
0.91 99.0 0.97 Zm.947.1.A1_at BF733123 - - 2e-2 At3g17180 scpl33 (serine carboxypeptidase-like 33) O.I. H.G. S.X.
0.71 88.2 0.97 Zm.9620.1.A1_at CA403653 alginate regulatory protein AlgP - 2e+0 At1g11850 unknown protein O.I. H.G. S.X.
0.50 65.7 0.98 Zm.11836.1.A1_s_at BM381136 hypothetical protein LOC100193763 - 3e-1 At1g52470 hydrolase O.I. H.G. S.X.
0.32 33.4 0.98 Zm.9117.1.A1_at CF636944 hypothetical protein LOC100274722 - 4e-1 At1g71865 unknown protein O.I. H.G. S.X.
0.13 6.8 0.98 Zm.9333.1.A1_at BM347779 - - 1e+0 At3g58720 zinc finger (C3HC4-type RING finger) family protein O.I. H.G. S.X.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.63	81.1	0.94	Zm.13345.5.A1_x_at	BM337190	z1A alpha zein protein /// z1A alpha zein protein /// hypothetical protein LOC100275744 /// hypothetical protein LOC100279024 /// Zein-alpha PMS2	-	2e+0	At5g62360	invertase/pectin methylesterase inhibitor family protein	O.I.	H.G.	S.X.
0.61	79.5	0.94	Zm.10506.1.S1_at	BQ578130	-	-	5e-10	At1g29250	nucleic acid binding	O.I.	H.G.	S.X.
0.50	65.7	0.98	Zm.9622.1.A1_at	BM350167	Hypothetical protein LOC100191225	-	6e+0	At5g42110	unknown protein	O.I.	H.G.	S.X.
0.44	55.7	0.97	Zm.15977.1.A1_at	AY108613.1	-	-	5e+0	At5g19050	unknown protein	O.I.	H.G.	S.X.
0.39	45.6	0.96	Zm.9917.1.A1_at	BM331863	ribosomal protein L32 containing protein	-	1e+0	At1g69485	structural constituent of ribosome	O.I.	H.G.	S.X.
0.36	41.3	0.97	Zm.17093.1.S1_at	CO523236	hypothetical protein LOC100193332	-	5e-2	At2g27260	-	O.I.	H.G.	S.X.
0.33	36.0	0.97	Zm.1029.1.S1_at	BE640121	-	-	7e-1	At5g09460	transcription factor/ transcription regulator	O.I.	H.G.	S.X.
0.32	33.4	0.97	Zm.6587.1.A1_at	BM378727	acyl CoA synthetase	-	1e-5	At1g64400	long-chain-fatty-acid--CoA ligase, putative / long-chain acyl-CoA synthetase, putative	O.I.	H.G.	S.X.
0.31	31.6	0.97	Zm.9529.1.A1_at	CA399003	hypothetical protein LOC100191488	-	3e-35	At1g20380	prolyl oligopeptidase, putative / prolyl endopeptidase, putative / post-proline cleaving enzyme, putative	O.I.	H.G.	S.X.
0.29	28.1	0.96	Zm.18106.1.S1_at	AY367051.1	scarecrow-like 23	-	3e+1	At5g05550	transcription factor	O.I.	H.G.	S.X.
0.27	24.6	0.95	Zm.8646.1.A1_at	BM349186	-	-	7e-2	At4g39680	SAP domain-containing protein	O.I.	H.G.	S.X.
0.27	24.6	0.95	Zm.10513.1.S1_at	AY105530.1	hypothetical protein LOC100277818	-	1e-1	At5g46730	glycine-rich protein	O.I.	H.G.	S.X.
0.27	24.6	0.97	Zm.6687.1.A1_at	AW438093	phosphoribulokinase	-	3e-31	At1g32060	PRK (PHOSPHORIBULOKINASE)	O.I.	H.G.	S.X.
0.25	21.3	0.98	Zm.16286.1.A1_at	CO520397	-	-	5e-10	At2g23390	-	O.I.	H.G.	S.X.

Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
15.7 99.0 GSM320447 protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1 GSE12770 Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
13.6 98.8 GSM320450 protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1 GSE12770 Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
11.7 98.6 GSM320451 protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2 GSE12770 Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
9.7 98.3 GSM320452 protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3 GSE12770 Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
9.4 98.3 GSM320448 protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2 GSE12770 Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
9.3 98.2 GSM320449 protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3 GSE12770 Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
8.5 98.1 GSM320453 protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1 GSE12770 Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
8.0 98.0 GSM320455 protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3 GSE12770 Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
7.6 97.9 GSM385709 Deep-sowing 10d treatment TIBA, biological rep1 GSE15371 Auxin-induced gene expression in mesocotyl elongation of maize inbred line 3681-4 tolerant to deep-sowing
6.7 97.6 GSM385710 Deep-sowing 10d treatment TIBA, biological rep2 GSE15371 Auxin-induced gene expression in mesocotyl elongation of maize inbred line 3681-4 tolerant to deep-sowing

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera

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