Co-expression analysis

Gene ID	Zm.9621.1.A1_at
Gene name	ethylene-responsive transcription factor 3
Homology with Arabidopsis	Similar to At1g69490: NAP (NAC-like, activated by AP3/PI) (HF=4e+0)
Module size	6 genes
NF	0.48
%ile	61.2

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.83	95.6	0.97	Zm.9621.1.A1_at	BM333959	ethylene-responsive transcription factor 3	-	4e+0	At1g69490	NAP (NAC-like, activated by AP3/PI)	O.I.	H.G.	S.X.	Please select
0.91	99.0	0.97	Zm.947.1.A1_at	BF733123	-	-	2e-2	At3g17180	scpl33 (serine carboxypeptidase-like 33)	O.I.	H.G.	S.X.	Please select
0.71	88.2	0.97	Zm.9620.1.A1_at	CA403653	alginate regulatory protein AlgP	-	2e+0	At1g11850	unknown protein	O.I.	H.G.	S.X.	Please select
0.50	65.7	0.98	Zm.11836.1.A1_s_at	BM381136	hypothetical protein LOC100193763	-	3e-1	At1g52470	hydrolase	O.I.	H.G.	S.X.	Please select
0.32	33.4	0.98	Zm.9117.1.A1_at	CF636944	hypothetical protein LOC100274722	-	4e-1	At1g71865	unknown protein	O.I.	H.G.	S.X.	Please select
0.13	6.8	0.98	Zm.9333.1.A1_at	BM347779	-	-	1e+0	At3g58720	zinc finger (C3HC4-type RING finger) family protein	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
15.7	99.0	GSM320447	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
13.6	98.8	GSM320450	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
11.7	98.6	GSM320451	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
9.7	98.3	GSM320452	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
9.4	98.3	GSM320448	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
9.3	98.2	GSM320449	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
8.5	98.1	GSM320453	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
8.0	98.0	GSM320455	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
7.6	97.9	GSM385709	Deep-sowing 10d treatment TIBA, biological rep1	GSE15371	Auxin-induced gene expression in mesocotyl elongation of maize inbred line 3681-4 tolerant to deep-sowing
6.7	97.6	GSM385710	Deep-sowing 10d treatment TIBA, biological rep2	GSE15371	Auxin-induced gene expression in mesocotyl elongation of maize inbred line 3681-4 tolerant to deep-sowing

Inter-species module comparison

A co-expression module including the wheat gene, TaAffx.9198.1.S1_at, orthologous to the query gene, Zm.9621.1.A1_at

VF	%ile	Gene ID	Repr. ID	Gene Name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.91	98.2	TaAffx.9198.1.S1_at	At1g69490	-	-	6e-1	At2g04046	-	O.I.	H.G.	S.X.	Please select
0.15	17.1	Ta.6497.1.A1_at	At1g69490	-	-	2e+0	At3g60966	protein binding / zinc ion binding	O.I.	H.G.	S.X.	Please select
0.05	6.7	Ta.2932.1.S1_at	At1g69490	-	-	7e-2	At2g23430	ICK1	O.I.	H.G.	S.X.	Please select
0.05	6.7	Ta.14506.1.S1_s_at	At1g69490	-	-	1e-4	At4g25680	unknown protein	O.I.	H.G.	S.X.	Please select
0.03	4.7	Ta.8167.2.S1_s_at	At1g69490	-	-	4e-1	At3g53610	ATRAB8	O.I.	H.G.	S.X.	Please select
0.02	3.6	Ta.14245.1.S1_x_at	At1g69490	-	-	4e-12	At1g54080	oligouridylate-binding protein, putative	O.I.	H.G.	S.X.	Please select

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Vitis_vinifera

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