Co-expression analysis

Gene ID Zm.9602.1.A1_at
Gene name
Homology with ArabidopsisSimilar to At2g28940: protein kinase family protein (HF=3e-1)
Module size 7 genes
NF 0.08
%ile 4.5

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.7590.80.98Zm.9602.1.A1_atBM339194--3e-1At2g28940protein kinase family proteinO.I.H.G.S.X.
0.2928.10.98Zm.10570.1.A1_atBM380316electron transporter-2e+1At2g16005MD-2-related lipid recognition domain-containing protein / ML domain-containing proteinO.I.H.G.S.X.
0.158.60.99ZmAffx.995.1.S1_atAI855362Sister of ramosa 3-2e-6At1g22210trehalose-6-phosphate phosphatase, putativeO.I.H.G.S.X.
0.072.90.98ZmAffx.575.1.A1_atAI714774--1e-2At1g77590LACS9 (LONG CHAIN ACYL-COA SYNTHETASE 9)O.I.H.G.S.X.
0.041.50.98Zm.15017.1.A1_atBQ538608hypothetical protein LOC100272813-9e-2At1g04220KCS2 (3-KETOACYL-COA SYNTHASE 2)O.I.H.G.S.X.
0.041.50.99Zm.16459.1.S1_atAY111971.1--5e+0At5g01075beta-galactosidaseO.I.H.G.S.X.
0.031.10.99Zm.16578.1.A1_a_atCK369163--3e-1At5g37820NIP4O.I.H.G.S.X.

VF%ileCCGene IDRepr. IDGene nameFunc.EvAGI codeArabidopsis gene nameO.I.H.G.S.X.Other DB
0.4455.70.98Zm.3709.1.S1_s_atAY105883.1RNA recognition motif containing protein-3e+0At1g14340RNA recognition motif (RRM)-containing proteinO.I.H.G.S.X.
0.3336.00.98Zm.2319.2.A1_atCD444652--5e+0At5g65350histone H3O.I.H.G.S.X.
0.3336.00.98Zm.14397.1.A1_atBM351246OB-fold nucleic acid binding domain containing protein-4e-1At2g33845DNA-binding protein-relatedO.I.H.G.S.X.
0.3336.00.98--O.I.H.G.S.X.
0.3336.00.99Zm.9956.1.A1_atBM076038--1e+1At4g30993unknown proteinO.I.H.G.S.X.
0.3131.60.98Zm.2437.1.A1_atCK370472--1e-1At4g33730pathogenesis-related protein, putativeO.I.H.G.S.X.
0.3131.60.99Zm.18300.1.A1_atCO527784hypothetical protein LOC100273748-5e-1At3g50690leucine-rich repeat family proteinO.I.H.G.S.X.
0.2928.10.99Zm.8446.1.A1_atCD436884hypothetical protein LOC100194006 /// hypothetical protein LOC100276606-5e-11At1g32070ATNSI (NUCLEAR SHUTTLE INTERACTING)O.I.H.G.S.X.
0.2521.30.99Zm.8449.1.A1_atCK828099hypothetical protein LOC100276511-8e-1At3g61070PEX11EO.I.H.G.S.X.
0.2521.30.99Zm.17262.1.S1_atCF244949hypothetical protein LOC100191241-2e-2At5g10750unknown proteinO.I.H.G.S.X.


Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
15.499.0GSM320450protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
14.798.9GSM320452protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
14.198.8GSM320448protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
13.998.8GSM320451protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
13.598.8GSM320455protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
13.398.8GSM320453protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
12.798.7GSM320449protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
11.798.6GSM320447protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
11.298.5GSM320454protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
3.094.0GSM320457protocol: Methylation filtration (MF) - genotype: B73 maize inbred - rep2GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera



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