Co-expression analysis

Gene ID Zm.9602.1.A1_at
Gene name
Homology with ArabidopsisSimilar to At2g28940: protein kinase family protein (HF=3e-1)
Module size 7 genes
NF 0.08
%ile 4.5

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.7590.80.98Zm.9602.1.A1_atBM339194--3e-1At2g28940protein kinase family proteinO.I.H.G.S.X.
0.2928.10.98Zm.10570.1.A1_atBM380316electron transporter-2e+1At2g16005MD-2-related lipid recognition domain-containing protein / ML domain-containing proteinO.I.H.G.S.X.
0.158.60.99ZmAffx.995.1.S1_atAI855362Sister of ramosa 3-2e-6At1g22210trehalose-6-phosphate phosphatase, putativeO.I.H.G.S.X.
0.072.90.98ZmAffx.575.1.A1_atAI714774--1e-2At1g77590LACS9 (LONG CHAIN ACYL-COA SYNTHETASE 9)O.I.H.G.S.X.
0.041.50.98Zm.15017.1.A1_atBQ538608hypothetical protein LOC100272813-9e-2At1g04220KCS2 (3-KETOACYL-COA SYNTHASE 2)O.I.H.G.S.X.
0.041.50.99Zm.16459.1.S1_atAY111971.1--5e+0At5g01075beta-galactosidaseO.I.H.G.S.X.
0.031.10.99Zm.16578.1.A1_a_atCK369163--3e-1At5g37820NIP4O.I.H.G.S.X.

Click More genes



Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
15.499.0GSM320450protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
14.798.9GSM320452protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
14.198.8GSM320448protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
13.998.8GSM320451protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
13.598.8GSM320455protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
13.398.8GSM320453protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
12.798.7GSM320449protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
11.798.6GSM320447protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
11.298.5GSM320454protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
3.094.0GSM320457protocol: Methylation filtration (MF) - genotype: B73 maize inbred - rep2GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO

Inter-species module comparison

A co-expression module including the grape gene, 1612128_at, orthologous to the query gene, Zm.9602.1.A1_at

VF%ileGene IDRepr. IDGene NameFunc.EvAGI codeArabidopsis gene nameO.I.H.G.S.X.Other DB
0.9198.81612128_atAt2g28940--3e-1At5g18290SIP1O.I.H.G.S.X.
0.2734.01619014_atAt2g28940--1e+0At2g46280TRIP-1 (TGF-BETA RECEPTOR INTERACTING PROTEIN 1)O.I.H.G.S.X.
0.045.21616661_atAt2g28940--7e-9At3g22190IQD5 (IQ-domain 5)O.I.H.G.S.X.
0.034.21615765_x_atAt2g28940--7e-4At1g55680WD-40 repeat family proteinO.I.H.G.S.X.
0.023.21615183_atAt2g28940hypothetical protein LOC100246016-7e-15At1g05360unknown proteinO.I.H.G.S.X.
0.012.11611098_atAt2g28940--1e-3At5g51180unknown proteinO.I.H.G.S.X.

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum



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