Co-expression analysis

Gene ID Zm.9602.1.A1_at
Gene name
Homology with ArabidopsisSimilar to At2g28940: protein kinase family protein (HF=3e-1)
Module size 7 genes
NF 0.08
%ile 4.5

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.7590.80.98Zm.9602.1.A1_atBM339194--3e-1At2g28940protein kinase family proteinO.I.H.G.S.X.
0.2928.10.98Zm.10570.1.A1_atBM380316electron transporter-2e+1At2g16005MD-2-related lipid recognition domain-containing protein / ML domain-containing proteinO.I.H.G.S.X.
0.158.60.99ZmAffx.995.1.S1_atAI855362Sister of ramosa 3-2e-6At1g22210trehalose-6-phosphate phosphatase, putativeO.I.H.G.S.X.
0.072.90.98ZmAffx.575.1.A1_atAI714774--1e-2At1g77590LACS9 (LONG CHAIN ACYL-COA SYNTHETASE 9)O.I.H.G.S.X.
0.041.50.98Zm.15017.1.A1_atBQ538608hypothetical protein LOC100272813-9e-2At1g04220KCS2 (3-KETOACYL-COA SYNTHASE 2)O.I.H.G.S.X.
0.041.50.99Zm.16459.1.S1_atAY111971.1--5e+0At5g01075beta-galactosidaseO.I.H.G.S.X.
0.031.10.99Zm.16578.1.A1_a_atCK369163--3e-1At5g37820NIP4O.I.H.G.S.X.

Click More genes



Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
15.499.0GSM320450protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
14.798.9GSM320452protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
14.198.8GSM320448protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
13.998.8GSM320451protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
13.598.8GSM320455protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
13.398.8GSM320453protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
12.798.7GSM320449protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
11.798.6GSM320447protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
11.298.5GSM320454protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
3.094.0GSM320457protocol: Methylation filtration (MF) - genotype: B73 maize inbred - rep2GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO

Inter-species module comparison

A co-expression module including the wheat gene, TaAffx.84503.1.S1_at, orthologous to the query gene, Zm.9602.1.A1_at

VF%ileGene IDRepr. IDGene NameFunc.EvAGI codeArabidopsis gene nameO.I.H.G.S.X.Other DB
0.9198.2TaAffx.84503.1.S1_atAt2g28940--3e-1At4g02550unknown proteinO.I.H.G.S.X.
0.5879.2Ta.12794.1.A1_atAt2g28940--1e+1At4g22160unknown proteinO.I.H.G.S.X.
0.5273.7Ta.6082.1.S1_atAt2g28940--5e-1At3g07590small nuclear ribonucleoprotein D1, putative / snRNP core protein D1, putative / Sm protein D1, putativeO.I.H.G.S.X.
0.5072.4Ta.6082.1.S1_x_atAt2g28940--5e-1At3g07590small nuclear ribonucleoprotein D1, putative / snRNP core protein D1, putative / Sm protein D1, putativeO.I.H.G.S.X.
0.4464.5Ta.10947.1.S1_atAt2g28940--3e+0At4g08280-O.I.H.G.S.X.
0.4464.5Ta.7444.2.S1_atAt2g28940--8e-1At1g08220-O.I.H.G.S.X.
0.4362.2Ta.28364.1.S1_x_atAt2g28940Plasma membrane H+-ATPase-1e-97At4g30190AHA2O.I.H.G.S.X.
0.4260.9Ta.5400.1.S1_a_atAt2g28940--7e-5At5g12970C2 domain-containing proteinO.I.H.G.S.X.
0.4159.6TaAffx.129193.1.S1_s_atAt2g28940--2e-9At2g35680dual specificity protein phosphatase family proteinO.I.H.G.S.X.
0.4159.6Ta.25206.1.A1_atAt2g28940--2e+1At5g05360unknown proteinO.I.H.G.S.X.
0.4159.6TaAffx.33916.1.S1_atAt2g28940--2e-2At3g10260reticulon family proteinO.I.H.G.S.X.
0.4058.4Ta.1862.2.S1_x_atAt2g28940--1e-12At1g53400unknown proteinO.I.H.G.S.X.
0.3956.1Ta.30816.1.S1_s_atAt2g28940GID2L-2e-1At1g49010myb family transcription factorO.I.H.G.S.X.
0.3956.1Ta.28364.1.S1_atAt2g28940plasma membrane H+-ATPase-1e-97At4g30190AHA2O.I.H.G.S.X.
0.3956.1Ta.7147.2.S1_atAt2g28940--9e-9At3g54300ATVAMP727 (VESICLE-ASSOCIATED MEMBRANE PROTEIN 727)O.I.H.G.S.X.
0.3854.7Ta.5106.3.S1_a_atAt2g28940--4e+0At5g07520GRP18 (GLYCINE-RICH PROTEIN 18)O.I.H.G.S.X.
0.3753.0TaAffx.108337.1.S1_s_atAt2g28940--9e-13At2g30650catalyticO.I.H.G.S.X.
0.3753.0TaAffx.110912.1.S1_s_atAt2g28940--2e-7At1g29690CAD1 (constitutively activated cell death 1)O.I.H.G.S.X.
0.3753.0TaAffx.93268.1.S1_atAt2g28940--1e+0At5g03900-O.I.H.G.S.X.
0.3448.1Ta.6750.3.S1_atAt2g28940--1e-23At5g65940CHY1 (BETA-HYDROXYISOBUTYRYL-COA HYDROLASE 1)O.I.H.G.S.X.
0.3346.9Ta.6595.1.S1_atAt2g28940--2e+0At5g23035-O.I.H.G.S.X.
0.3346.9Ta.3443.3.S1_a_atAt2g28940--9e-8At1g22050MUB6 (MEMBRANE-ANCHORED UBIQUITIN-FOLD PROTEIN 6 PRECURSOR)O.I.H.G.S.X.
0.3244.4Ta.12066.1.S1_s_atAt2g28940--5e-6At4g24160hydrolase, alpha/beta fold family proteinO.I.H.G.S.X.
0.3142.7Ta.7925.2.S1_a_atAt2g28940--2e-5At3g13550FUS9 (FUSCA 9)O.I.H.G.S.X.
0.3142.7Ta.3443.2.S1_x_atAt2g28940--3e+0At1g15580IAA5 (INDOLE-3-ACETIC ACID INDUCIBLE 5)O.I.H.G.S.X.
0.2939.2Ta.4968.3.S1_a_atAt2g28940--5e-6At1g21450SCL1 (SCARECROW-LIKE 1)O.I.H.G.S.X.
0.2839.2Ta.10686.1.A1_atAt2g28940--2e+0At4g38700disease resistance-responsive family proteinO.I.H.G.S.X.
0.2735.6Ta.22902.1.S1_atAt2g28940--1e+0At4g09780meprin and TRAF homology domain-containing protein / MATH domain-containing proteinO.I.H.G.S.X.
0.2735.6TaAffx.85922.1.S1_s_atAt2g28940--3e-1At1g74560NRP1 (NAP1-RELATED PROTEIN 1)O.I.H.G.S.X.
0.2735.6Ta.185.1.S1_atAt2g28940wali7 protein-6e-1At1g32370TOM2B (TOBAMOVIRUS MULTIPLICATION 2B)O.I.H.G.S.X.
0.2633.6TaAffx.128800.1.S1_atAt2g28940--1e-10At1g65260PTAC4 (PLASTID TRANSCRIPTIONALLY ACTIVE4)O.I.H.G.S.X.
0.2633.6Ta.7147.3.S1_a_atAt2g28940--5e-3At3g54300ATVAMP727 (VESICLE-ASSOCIATED MEMBRANE PROTEIN 727)O.I.H.G.S.X.
0.2633.6Ta.7147.3.S1_x_atAt2g28940--5e-3At3g54300ATVAMP727 (VESICLE-ASSOCIATED MEMBRANE PROTEIN 727)O.I.H.G.S.X.
0.2532.1Ta.28765.2.S1_a_atAt2g28940--8e+0At5g38420ribulose bisphosphate carboxylase small chain 2B / RuBisCO small subunit 2B (RBCS-2B) (ATS2B)O.I.H.G.S.X.
0.2329.0Ta.99.1.S1_x_atAt2g28940O-acetylserine (thiol) lyase-5e-18At4g14880OASA1 (O-ACETYLSERINE (THIOL) LYASE (OAS-TL) ISOFORM A1)O.I.H.G.S.X.
0.1922.4Ta.99.1.S1_atAt2g28940O-acetylserine (thiol) lyase-5e-18At4g14880OASA1 (O-ACETYLSERINE (THIOL) LYASE (OAS-TL) ISOFORM A1)O.I.H.G.S.X.

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Vitis_vinifera



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