Co-expression analysis

Gene ID Zm.9602.1.A1_at
Gene name
Homology with ArabidopsisSimilar to At2g28940: protein kinase family protein (HF=3e-1)
Module size 7 genes
NF 0.08
%ile 4.5

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.7590.80.98Zm.9602.1.A1_atBM339194--3e-1At2g28940protein kinase family proteinO.I.H.G.S.X.
0.2928.10.98Zm.10570.1.A1_atBM380316electron transporter-2e+1At2g16005MD-2-related lipid recognition domain-containing protein / ML domain-containing proteinO.I.H.G.S.X.
0.158.60.99ZmAffx.995.1.S1_atAI855362Sister of ramosa 3-2e-6At1g22210trehalose-6-phosphate phosphatase, putativeO.I.H.G.S.X.
0.072.90.98ZmAffx.575.1.A1_atAI714774--1e-2At1g77590LACS9 (LONG CHAIN ACYL-COA SYNTHETASE 9)O.I.H.G.S.X.
0.041.50.98Zm.15017.1.A1_atBQ538608hypothetical protein LOC100272813-9e-2At1g04220KCS2 (3-KETOACYL-COA SYNTHASE 2)O.I.H.G.S.X.
0.041.50.99Zm.16459.1.S1_atAY111971.1--5e+0At5g01075beta-galactosidaseO.I.H.G.S.X.
0.031.10.99Zm.16578.1.A1_a_atCK369163--3e-1At5g37820NIP4O.I.H.G.S.X.

Click More genes



Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
15.499.0GSM320450protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
14.798.9GSM320452protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
14.198.8GSM320448protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
13.998.8GSM320451protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
13.598.8GSM320455protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
13.398.8GSM320453protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
12.798.7GSM320449protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
11.798.6GSM320447protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
11.298.5GSM320454protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
3.094.0GSM320457protocol: Methylation filtration (MF) - genotype: B73 maize inbred - rep2GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO

Inter-species module comparison

A co-expression module including the rice gene, Os02g0686500, orthologous to the query gene, Zm.9602.1.A1_at

VF%ileGene IDRepr. IDGene NameFunc.EvAGI codeArabidopsis gene nameO.I.H.G.S.X.Other DB
0.5371.3Os02g0686500At2g28940-Conserved hypothetical protein3e+0At5g27430signal peptidase subunit family proteinO.I.H.G.S.X.
0.4458.1Os06g0248400At2g28940-Hypothetical protein1e-3At2g23320WRKY15O.I.H.G.S.X.
0.1611.3Os03g0212200At2g28940-Leucine-rich repeat, typical subtype containingprotein1e-1At1g13550unknown proteinO.I.H.G.S.X.
0.073.7Os09g0568000At2g28940--1e-3At3g10770nucleic acid bindingO.I.H.G.S.X.
0.052.5Os03g0423200At2g28940-Hypothetical protein4e-12At4g18230-O.I.H.G.S.X.
0.021.0Os03g0282800At2g28940-Conserved hypothetical protein6e-4At3g53490unknown proteinO.I.H.G.S.X.

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera



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