Co-expression analysis

Gene ID	Zm.9599.1.A1_at
Gene name
Homology with Arabidopsis	Similar to At1g27330: - (HF=2e-1)
Module size	22 genes
NF	0.54
%ile	70.7

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.71	88.2	0.95	Zm.9599.1.A1_at	BM333574	-	-	2e-1	At1g27330	-	O.I.	H.G.	S.X.	Please select
0.76	91.1	0.98	Zm.19026.1.A1_at	AI619121	hypothetical protein LOC100193145	-	2e-5	At3g20250	APUM5 (Arabidopsis Pumilio 5)	O.I.	H.G.	S.X.	Please select
0.74	90.3	0.97	Zm.15896.1.A1_at	AY103971.1	-	-	4e-16	At4g32010	HSL1 (HSI2-LIKE 1)	O.I.	H.G.	S.X.	Please select
0.72	88.6	0.98	Zm.8950.1.A1_at	AY109015.1	-	-	1e-17	At2g18230	AtPPa2 (Arabidopsis thaliana pyrophosphorylase 2)	O.I.	H.G.	S.X.	Please select
0.69	86.5	0.98	Zm.5458.1.A1_at	AY105574.1	starch synthase IIc precursor	-	2e+0	At3g01940	unknown protein	O.I.	H.G.	S.X.	Please select
0.67	85.8	0.97	Zm.16351.1.A1_at	CF623648	AIG2-like protein	-	5e-4	At2g24390	-	O.I.	H.G.	S.X.	Please select
0.63	81.1	0.97	Zm.7699.1.A1_at	BM080093	hypothetical protein LOC100193629	-	2e-8	At3g52210	mRNA capping enzyme family protein	O.I.	H.G.	S.X.	Please select
0.63	81.1	0.98	Zm.5721.1.A1_a_at	AY105083.1	Hypothetical protein LOC100191423	-	9e-2	At4g12460	ORP2B (OSBP(OXYSTEROL BINDING PROTEIN)-RELATED PROTEIN 2B)	O.I.	H.G.	S.X.	Please select
0.60	77.8	0.97	Zm.19286.1.S1_at	AI621791	hypothetical protein LOC100275478	-	7e-1	At3g25855	unknown protein	O.I.	H.G.	S.X.	Please select
0.57	75.1	0.97	Zm.5491.1.A1_at	AY111486.1	-	-	1e-5	At2g37050	kinase	O.I.	H.G.	S.X.	Please select
0.56	74.4	0.97	Zm.5480.1.A1_at	AY103756.1	glycine-rich RNA-binding protein 7	-	5e-1	At2g46000	unknown protein	O.I.	H.G.	S.X.	Please select
0.56	74.4	0.98	Zm.6063.2.S1_at	AI668193	Vacuolar proton pump homolog1	-	2e-10	At1g15690	AVP1	O.I.	H.G.	S.X.	Please select
0.55	71.6	0.98	Zm.5818.1.A1_at	AY105653.1	-	-	4e-7	At4g00570	malate oxidoreductase, putative	O.I.	H.G.	S.X.	Please select
0.54	69.8	0.98	Zm.6064.1.S1_at	CF020510	low-molecular-weight cysteine-rich protein LCR70	-	4e+0	At4g04330	unknown protein	O.I.	H.G.	S.X.	Please select
0.52	67.3	0.98	Zm.1019.1.A1_at	AW288674	actin-depolymerizing factor 5	-	2e-19	At2g16700	ADF5 (ACTIN DEPOLYMERIZING FACTOR 5)	O.I.	H.G.	S.X.	Please select
0.52	67.3	0.97	Zm.4020.1.A1_at	CF637232	hypothetical protein LOC100191912	-	2e-17	At3g07110	60S ribosomal protein L13A (RPL13aA)	O.I.	H.G.	S.X.	Please select
0.48	61.3	0.97	Zm.7437.1.A1_at	BM078398	-	-	1e+0	At3g58100	PDCB5 (PLASMODESMATA CALLOSE-BINDING PROTEIN 5)	O.I.	H.G.	S.X.	Please select
0.44	55.7	0.97	Zm.4582.1.A1_at	AI737212	hypothetical protein LOC100275429	-	2e+0	At4g18430	AtRABA1e (Arabidopsis Rab GTPase homolog A1e)	O.I.	H.G.	S.X.	Please select
0.38	44.2	0.97	Zm.11856.1.A1_at	BM381264	-	-	3e+0	At4g36260	STY2 (STYLISH 2)	O.I.	H.G.	S.X.	Please select
0.35	38.9	0.97	Zm.6810.2.A1_at	CF631529	-	-	3e-1	At4g04632	ATP binding / protein kinase	O.I.	H.G.	S.X.	Please select
0.32	33.4	0.97	Zm.19312.1.A1_at	BM336284	-	-	1e+1	At5g54660	heat shock protein-related	O.I.	H.G.	S.X.	Please select
0.31	31.6	0.98	Zm.19311.1.A1_at	CO526713	AT-hook protein 1	-	3e-1	At4g09270	unknown protein	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
8.2	98.0	GSM320451	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
7.6	97.9	GSM320455	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
7.2	97.8	GSM385709	Deep-sowing 10d treatment TIBA, biological rep1	GSE15371	Auxin-induced gene expression in mesocotyl elongation of maize inbred line 3681-4 tolerant to deep-sowing
6.6	97.6	GSM385710	Deep-sowing 10d treatment TIBA, biological rep2	GSE15371	Auxin-induced gene expression in mesocotyl elongation of maize inbred line 3681-4 tolerant to deep-sowing
6.5	97.5	GSM320453	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
6.4	97.5	GSM320450	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
6.3	97.4	GSM320447	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
5.8	97.2	GSM320449	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
5.6	97.1	GSM320452	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
5.0	96.7	GSM320448	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Vitis_vinifera

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