Co-expression analysis

Gene ID Zm.9590.1.A1_at
Gene name
Homology with ArabidopsisSimilar to At1g75220: integral membrane protein, putative (HF=6e-1)
Module size 6 genes
NF 0.69
%ile 90.7

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.6785.80.94Zm.9590.1.A1_atCK986177--6e-1At1g75220integral membrane protein, putativeO.I.H.G.S.X.
0.8094.00.94Zm.8828.1.A1_atBM075809hypothetical protein LOC100191533-1e+0At3g63095-O.I.H.G.S.X.
0.7389.90.95Zm.10740.1.S1_a_atCO520864non-cyanogenic beta-glucosidase-1e-2At3g60130BGLU16 (BETA GLUCOSIDASE 16)O.I.H.G.S.X.
0.6785.80.94Zm.2620.1.A1_atAW066552--3e-8At3g12980HAC5O.I.H.G.S.X.
0.5065.70.93Zm.818.2.S1_atCO531833hypothetical protein LOC100216560-1e+1At5g67490unknown proteinO.I.H.G.S.X.
0.4658.40.94Zm.16938.1.A1_atAY108209.1--3e+0At4g28485unknown proteinO.I.H.G.S.X.

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Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
17.399.1GSM320447protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
16.899.1GSM320448protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
14.798.9GSM320449protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
9.998.3GSM320450protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
9.698.3GSM320455protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
8.798.1GSM320451protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
8.798.1GSM320452protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
8.698.1GSM320454protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
8.498.1GSM320453protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
2.993.8GSM320457protocol: Methylation filtration (MF) - genotype: B73 maize inbred - rep2GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO

Inter-species module comparison

A co-expression module including the rice gene, Os05g0567800, orthologous to the query gene, Zm.9590.1.A1_at

VF%ileGene IDRepr. IDGene NameFunc.EvAGI codeArabidopsis gene nameO.I.H.G.S.X.Other DB
0.7088.4Os05g0567800At1g75220-Integral membrane protein3e-6At1g75220integral membrane protein, putativeO.I.H.G.S.X.
0.3745.0Os05g0444300At1g75220-Eukaryotic protein of unknown function DUF914family protein3e+0At5g50840-O.I.H.G.S.X.
0.2931.1Os02g0558100At1g75220-Chloride channel (Fragment)8e-18At5g49890CLC-C (CHLORIDE CHANNEL C)O.I.H.G.S.X.
0.2524.1Os08g0300300At1g75220-C1C-Nt1 protein1e+0At5g66815unknown proteinO.I.H.G.S.X.
0.2524.1Os03g0215000At1g75220-Conserved hypothetical protein6e-14At1g76340integral membrane family proteinO.I.H.G.S.X.
0.2321.2Os03g0720300At1g75220-Glutamate decarboxylase isozyme 1 (EC 4.1.1.15)7e-76At5g17330GADO.I.H.G.S.X.
0.1915.1Os03g0132000At1g75220-4-coumarate-CoA ligase-like protein2e-5At1g20490AMP-dependent synthetase and ligase family proteinO.I.H.G.S.X.
0.127.2Os04g0553800At1g75220-Glycosyl transferase, family 8 protein8e-14At2g35710glycogenin glucosyltransferase (glycogenin)-relatedO.I.H.G.S.X.
0.073.7Os04g0498200At1g75220-Cytochrome c oxidase subunit 6b (OSJNBa0029H02.1protein) (OSJNBa0067K08.22 protein)3e-10At5g57815cytochrome c oxidase subunit 6b, putativeO.I.H.G.S.X.

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera



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