Co-expression analysis

Gene ID	Zm.9580.1.A1_at
Gene name	hypothetical protein LOC100277774
Homology with Arabidopsis	Similar to At5g24155: squalene monooxygenase, putative / squalene epoxidase, putative (HF=6e+0)
Module size	6 genes
NF	0.49
%ile	62.0

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.63	81.1	0.97	Zm.9580.1.A1_at	BM332976	hypothetical protein LOC100277774	-	6e+0	At5g24155	squalene monooxygenase, putative / squalene epoxidase, putative	O.I.	H.G.	S.X.	Please select
0.67	85.8	0.97	Zm.1090.3.A1_x_at	AI714811	-	-	3e+0	At4g12990	unknown protein	O.I.	H.G.	S.X.	Please select
0.46	58.4	0.97	Zm.7453.1.A1_at	BM078460	Hypothetical protein LOC100192939	-	6e-3	At1g26560	BGLU40 (BETA GLUCOSIDASE 40)	O.I.	H.G.	S.X.	Please select
0.39	45.6	0.97	Zm.3995.1.S1_at	AY107938.1	COP9 signalosome complex subunit 5b	-	6e-10	At1g22920	CSN5A (COP9 SIGNALOSOME 5A)	O.I.	H.G.	S.X.	Please select
0.38	44.2	0.97	Zm.5157.1.A1_at	CF638048	-	-	5e-14	At5g45030	catalytic	O.I.	H.G.	S.X.	Please select
0.38	44.2	0.97	Zm.1209.1.S1_at	AY107780.1	3-oxoacyl-synthase III	-	9e-2	At1g62640	KAS III (3-KETOACYL-ACYL CARRIER PROTEIN SYNTHASE III)	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
15.0	98.9	GSM320453	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
14.6	98.9	GSM320448	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
14.1	98.8	GSM320452	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
14.0	98.8	GSM320450	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
13.7	98.8	GSM320449	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
13.4	98.8	GSM320447	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
13.1	98.7	GSM320451	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
12.9	98.7	GSM320455	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
11.6	98.6	GSM320454	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
6.1	97.4	GSM320467	protocol: Amplified fragment restriction polymorphism (AFLP) - genotype: B73 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Vitis_vinifera

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