Co-expression analysis

Gene ID Zm.9566.1.S1_at
Gene name beta-expansin 7
Homology with ArabidopsisSimilar to At3g49630: 2-oxoacid-dependent oxidase, putative (HF=6e-1)
Module size 20 genes
NF 0.34
%ile 33.4

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.8395.60.96Zm.9566.1.S1_atAF332180.1beta-expansin 7-6e-1At3g496302-oxoacid-dependent oxidase, putativeO.I.H.G.S.X.
0.4658.40.96Zm.646.2.S1_atAF129859.1CENPCA protein-7e-1At5g5729060S acidic ribosomal protein P3 (RPP3B)O.I.H.G.S.X.
0.4455.70.97Zm.10072.1.A1_atBM37894650S ribosomal protein L1-9e-19At3g63490ribosomal protein L1 family proteinO.I.H.G.S.X.
0.4149.70.97Zm.14433.1.S1_atCA401946hypothetical protein LOC100192707-2e+0At5g02310PRT6 (PROTEOLYSIS 6)O.I.H.G.S.X.
0.4048.50.97Zm.4776.2.A1_atCF026718pyruvate dehydrogenase E1 component alpha subunit-1e-39At1g59900AT-E1 ALPHAO.I.H.G.S.X.
0.3844.20.97Zm.9183.1.A1_atBM331963--7e-2At1g77810galactosyltransferase family proteinO.I.H.G.S.X.
0.3844.20.97Zm.9830.2.A1_a_atBM341631hypothetical protein LOC100193377-7e-2At2g20613unknown proteinO.I.H.G.S.X.
0.3641.30.96Zm.5112.1.A1_atAI600906--2e-45Atmg00480-O.I.H.G.S.X.
0.3538.90.97ZmAffx.1007.1.S1_atAI881371--1e+1At2g34570MEE21 (maternal effect embryo arrest 21)O.I.H.G.S.X.
0.3538.90.97Zm.4044.1.A1_atAY109936.1hypothetical protein LOC100273897 /// hypothetical protein LOC100274738-5e+0At5g13780GCN5-related N-acetyltransferase, putativeO.I.H.G.S.X.
0.3336.00.97Zm.11606.1.S1_atBM379264--8e-2At3g09922IPS1 (INDUCED BY PHOSPHATE STARVATION1)O.I.H.G.S.X.
0.3336.00.97Zm.6569.2.S1_a_atAY107413.1hypothetical protein LOC100276303-1e+0At3g59900ARGOS (AUXIN-REGULATED GENE INVOLVED IN ORGAN SIZE)O.I.H.G.S.X.
0.3233.40.96Zm.2603.2.S1_atAY111467.1--3e-2At5g02540short-chain dehydrogenase/reductase (SDR) family proteinO.I.H.G.S.X.
0.2724.60.97Zm.15655.1.A1_atCF627617hypothetical protein LOC100279251-9e-12At1g65950ABC1 family proteinO.I.H.G.S.X.
0.2724.60.96ZmAffx.1007.1.A1_atAI881371--1e+1At2g34570MEE21 (maternal effect embryo arrest 21)O.I.H.G.S.X.
0.2724.60.97Zm.13794.1.S1_atAY104961.1--7e-1At5g53280PDV1 (PLASTID DIVISION1)O.I.H.G.S.X.
0.2521.30.96Zm.5066.2.A1_a_atCB351032hypothetical protein LOC100272872-1e+0At3g08980signal peptidase I family proteinO.I.H.G.S.X.
0.2216.90.96Zm.17580.1.S1_atBM333532--2e+0At2g48070RPH1 (RESISTANCE TO PHYTOPHTHORA 1)O.I.H.G.S.X.
0.2014.20.96Zm.1067.2.A1_atCF626025vacuolar ATP synthase 16 kDa proteolipid subunit-2e-56At1g75630AVA-P4O.I.H.G.S.X.
0.1912.80.97Zm.10125.2.A1_x_atBM380760cytidine/deoxycytidylate deaminase family protein-4e+0At2g46230-O.I.H.G.S.X.

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Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
13.698.8GSM320455protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
12.398.7GSM320453protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
10.998.5GSM320454protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
8.998.2GSM320451protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
8.198.0GSM320449protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
7.197.7GSM320448protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
6.797.6GSM320447protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
6.797.6GSM320452protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
6.597.5GSM320450protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
3.194.3GSM206303Upper pulvinus 30 min polysomal RNA biorep 1GSE8320Transcriptional and translational gene regulation in the maize pulvinusLink to GEO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera



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