Co-expression analysis

Gene ID	Zm.9565.1.A1_at
Gene name	beta-expansin 3
Homology with Arabidopsis	Similar to At4g19270: unknown protein (HF=6e-1)
Module size	9 genes
NF	0.40
%ile	45.5

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.50	65.7	0.96	Zm.9565.1.A1_at	BM381516	beta-expansin 3	-	6e-1	At4g19270	unknown protein	O.I.	H.G.	S.X.	Please select
0.50	65.7	0.97	Zm.4335.3.A1_at	AY109325.1	-	-	1e-3	At2g24050	MIF4G domain-containing protein / MA3 domain-containing protein	O.I.	H.G.	S.X.	Please select
0.48	61.3	0.97	Zm.6054.2.S1_at	AY104332.1	-	-	6e-4	At2g41740	VLN2 (VILLIN 2)	O.I.	H.G.	S.X.	Please select
0.42	51.3	0.97	Zm.18276.1.A1_at	CO532399	dihydroneopterin aldolase	-	2e+0	At1g78800	glycosyl transferase family 1 protein	O.I.	H.G.	S.X.	Please select
0.42	51.3	0.97	Zm.2716.1.A1_at	CD440659	-	-	3e+0	At4g28700	AMT1	O.I.	H.G.	S.X.	Please select
0.38	44.2	0.97	Zm.18469.1.S1_at	BM378527	oxidoreductase	-	2e-7	At4g13250	short-chain dehydrogenase/reductase (SDR) family protein	O.I.	H.G.	S.X.	Please select
0.38	44.2	0.98	Zm.6644.2.A1_at	AY109212.1	-	-	4e+0	At5g42050	-	O.I.	H.G.	S.X.	Please select
0.29	28.1	0.97	Zm.12269.2.A1_a_at	AW256119	hypothetical protein LOC100193070	-	2e-4	At3g14130	(S)-2-hydroxy-acid oxidase, peroxisomal, putative / glycolate oxidase, putative / short chain alpha-hydroxy acid oxidase, putative	O.I.	H.G.	S.X.	Please select
0.21	15.5	0.98	Zm.17291.1.A1_at	CF637748	Zn-dependent hydrolases, including glyoxylases	-	2e-5	At4g33540	metallo-beta-lactamase family protein	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
7.2	97.8	GSM320453	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
7.1	97.7	GSM202320	B73 19 day after pollination embryo tissue, biological replicate 3	GSE8179	Cis-transcriptional variation in maize inbred lines B73 and Mo17 leads to additive expression - Embryo data
6.8	97.6	GSM320455	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
6.7	97.6	GSM320450	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
6.6	97.6	GSM320447	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
6.0	97.3	GSM320449	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
5.9	97.3	GSM202315	B73 19 day after pollination embryo tissue, biological replicate 2	GSE8179	Cis-transcriptional variation in maize inbred lines B73 and Mo17 leads to additive expression - Embryo data
5.7	97.2	GSM320454	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
5.7	97.2	GSM320451	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
5.7	97.2	GSM320448	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Vitis_vinifera

Back to the CoP portal site

Back to the KAGIANA project homepage