Co-expression analysis

Gene ID Zm.9555.2.A1_x_at
Gene name
Homology with ArabidopsisSimilar to At2g22241: unknown protein (HF=3e+0)
Module size 15 genes
NF 0.28
%ile 25.2

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.5775.10.98Zm.9555.2.A1_x_atCK347442--3e+0At2g22241unknown proteinO.I.H.G.S.X.
0.5571.60.98Zm.3783.1.S1_atAW331211Betaine aldehyde dehydrogenase-6e-4At3g48170ALDH10A9O.I.H.G.S.X.
0.4251.30.99ZmAffx.392.1.A1_atAI676820--1e+1At2g31035-O.I.H.G.S.X.
0.3641.30.99Zm.8586.1.A1_atBM338441--1e+0At3g13227serine-rich protein-relatedO.I.H.G.S.X.
0.3336.00.99Zm.5115.1.A1_atAI600917hypothetical protein LOC100272658-2e-46At3g20290ATEHD1 (EPS15 HOMOLOGY DOMAIN 1)O.I.H.G.S.X.
0.3233.40.99Zm.583.1.S1_atAF305892.1tangled1-3e-1At1g21350antioxidant/ oxidoreductaseO.I.H.G.S.X.
0.3233.40.99Zm.15891.2.A1_atBM26766060S ribosomal protein L13-2-7e-31At5g2390060S ribosomal protein L13 (RPL13D)O.I.H.G.S.X.
0.3029.80.99Zm.13196.1.S1_atAY105985.1t-snare-6e-2At5g59210myosin heavy chain-relatedO.I.H.G.S.X.
0.2828.10.99Zm.17641.1.S1_atCK368556--1e+0At3g62470pentatricopeptide (PPR) repeat-containing proteinO.I.H.G.S.X.
0.2521.30.99Zm.18815.1.A1_atCO527279hypothetical protein LOC100191886-2e+0At4g12530protease inhibitor/seed storage/lipid transfer protein (LTP) family proteinO.I.H.G.S.X.
0.2419.80.99Zm.6195.1.A1_x_atAI668513hypothetical protein LOC100275106-4e+0At4g17790-O.I.H.G.S.X.
0.2014.20.99Zm.4277.2.S1_a_atBQ704082--5e-17At1g54510ATNEK1 (ARABIDOPSIS THALIANA NIMA-RELATED SERINE/THREONINE KINASE 1)O.I.H.G.S.X.
0.1912.80.98ZmAffx.207.1.A1_atAI670215--5e-2At1g01390UDP-glucoronosyl/UDP-glucosyl transferase family proteinO.I.H.G.S.X.
0.1912.80.99Zm.12306.1.S1_atCO517988hypothetical protein LOC100216558-5e-2At5g19680leucine-rich repeat family proteinO.I.H.G.S.X.
0.1710.60.99ZmAffx.1083.1.A1_atAI974922--1e+0At1g59830PP2A-1O.I.H.G.S.X.

Click More genes



Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
9.198.2GSM320453protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
7.897.9GSM320455protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
6.697.6GSM320454protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
4.496.2GSM320447protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
3.895.5GSM323171Zm_SG200Dpep1_24hpi_IIGSE12892Maize gene expression during infection with Ustilago maydis strain SG200Dpep1Link to GEO
3.895.5GSM320450protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
3.494.9GSM320449protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
3.294.5GSM253255ZM_24h_SG200_3inf_IIIGSE10023Maize gene expression during infection with Ustilago maydisLink to GEO
3.194.3GSM253247ZM_12h_SG200_3inf_IIIGSE10023Maize gene expression during infection with Ustilago maydisLink to GEO
3.194.3GSM253252ZM_24h_Mock_3inf_IIIGSE10023Maize gene expression during infection with Ustilago maydisLink to GEO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera



Back to the CoP portal site

Back to the KAGIANA project homepage