Co-expression analysis

Gene ID	Zm.9555.1.A1_x_at
Gene name
Homology with Arabidopsis	Similar to At3g47350: short-chain dehydrogenase/reductase (SDR) family protein (HF=1e-2)
Module size	6 genes
NF	0.15
%ile	10.5

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.56	74.4	0.92	Zm.9555.1.A1_x_at	BM347835	-	-	1e-2	At3g47350	short-chain dehydrogenase/reductase (SDR) family protein	O.I.	H.G.	S.X.	Please select
0.38	44.2	0.92	Zm.5563.1.A1_at	BM337680	hypothetical protein LOC100272774	-	1e-2	At4g35730	unknown protein	O.I.	H.G.	S.X.	Please select
0.21	15.5	0.92	Zm.1829.1.A1_at	CF637700	brix domain-containing protein 1	-	3e+0	At5g17710	EMB1241 (embryo defective 1241)	O.I.	H.G.	S.X.	Please select
0.19	12.8	0.94	Zm.7788.1.A1_at	CK347752	anthocyanidin 3-O-glucosyltransferase	-	9e-1	At3g24093	-	O.I.	H.G.	S.X.	Please select
0.13	6.8	0.93	Zm.8766.1.A1_at	BM349453	-	-	1e+0	At5g58360	ATOFP3	O.I.	H.G.	S.X.	Please select
0.04	1.5	0.93	Zm.5985.2.S1_at	AY104529.1	Hypothetical protein LOC100217272	-	2e-34	At3g51270	ATP binding / catalytic/ protein serine/threonine kinase	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
10.6	98.4	GSM320455	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
10.5	98.4	GSM320454	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
10.2	98.4	GSM320453	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
9.4	98.3	GSM320450	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
8.4	98.1	GSM320448	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
8.2	98.0	GSM320449	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
8.1	98.0	GSM320451	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
7.2	97.8	GSM320452	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
6.9	97.7	GSM320447	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
2.7	93.2	GSM320443	protocol: mRNA - genotype: Mo17 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Vitis_vinifera

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