Co-expression analysis

Gene ID	Zm.9546.1.A1_at
Gene name	hypothetical protein LOC100276154
Homology with Arabidopsis	Similar to At5g65080: MAF5 (MADS AFFECTING FLOWERING 5) (HF=2e+0)
Module size	6 genes
NF	0.41
%ile	46.9

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.80	94.0	0.94	Zm.9546.1.A1_at	AY105569.1	hypothetical protein LOC100276154	-	2e+0	At5g65080	MAF5 (MADS AFFECTING FLOWERING 5)	O.I.	H.G.	S.X.	Please select
0.50	65.7	0.95	Zm.3709.1.S1_at	AY105883.1	RNA recognition motif containing protein	-	3e+0	At1g14340	RNA recognition motif (RRM)-containing protein	O.I.	H.G.	S.X.	Please select
0.42	51.3	0.94	Zm.4004.1.S1_at	AY122274.1	histone acetyl transferase MYST family 101	-	1e-101	At5g64610	HAM1 (HISTONE ACETYLTRANSFERASE OF THE MYST FAMILY 1)	O.I.	H.G.	S.X.	Please select
0.35	38.9	0.95	Zm.803.1.A1_at	CF625813	hypothetical protein LOC100274731	-	6e-1	At5g25210	unknown protein	O.I.	H.G.	S.X.	Please select
0.31	31.6	0.95	Zm.3565.1.A1_at	AW042565	-	-	5e-13	At1g54590	splicing factor Prp18 family protein	O.I.	H.G.	S.X.	Please select
0.25	21.3	0.93	Zm.13430.1.S1_at	AY110858.1	invertase cell wall4	-	2e-5	At3g52600	AtcwINV2 (Arabidopsis thaliana cell wall invertase 2)	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
10.0	98.4	GSM320451	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
9.9	98.3	GSM320449	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
8.8	98.1	GSM320455	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
8.7	98.1	GSM320453	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
8.6	98.1	GSM320452	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
7.9	97.9	GSM320448	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
7.7	97.9	GSM320447	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
7.0	97.7	GSM320450	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
6.7	97.6	GSM320454	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
2.5	92.6	GSM320442	protocol: mRNA - genotype: Mo17 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Vitis_vinifera

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