Co-expression analysis

Gene ID Zm.9542.1.A1_at
Gene name hypothetical protein LOC100192045
Homology with ArabidopsisSimilar to At4g16170: unknown protein (HF=3e-16)
Module size 16 genes
NF 0.48
%ile 59.9

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.7490.30.97Zm.9542.1.A1_atCF624708hypothetical protein LOC100192045-3e-16At4g16170unknown proteinO.I.H.G.S.X.
0.6785.80.97Zm.8321.1.S1_atCO528265calcium-dependent protein kinase, isoform AK1-3e+0At5g61350protein kinase family proteinO.I.H.G.S.X.
0.6279.80.97Zm.11551.1.A1_atAY108861.11-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino]imi dazole-4-carboxamide isomerase-4e-1At4g17960unknown proteinO.I.H.G.S.X.
0.6279.80.97Zm.18244.1.S1_atCN844522--3e+0At1g24260SEP3 (SEPALLATA3)O.I.H.G.S.X.
0.5775.10.97Zm.1773.1.S1_atCO524227hypothetical protein LOC100193052 /// hypothetical protein LOC100273661 /// hypothetical protein LOC100274588-6e-4At5g06370NC domain-containing proteinO.I.H.G.S.X.
0.5065.70.97Zm.1240.1.A1_atAI001233hypothetical protein LOC100274890-6e-3At3g29034unknown proteinO.I.H.G.S.X.
0.4658.40.97Zm.16017.1.A1_atCF244045--2e-4At5g08415lipoic acid synthase family proteinO.I.H.G.S.X.
0.4658.40.97Zm.16178.1.A1_s_atBM347672hypothetical protein LOC100275193 /// hypothetical protein LOC100276703-3e-5At4g39235unknown proteinO.I.H.G.S.X.
0.4455.70.98Zm.5947.1.A1_atAI665897--3e+0At2g16490XH domain-containing proteinO.I.H.G.S.X.
0.4352.80.98Zm.3633.2.S1_x_atCF634876APx1 - Cytosolic Ascorbate Peroxidase-3e-28At1g07890APX1 (ascorbate peroxidase 1)O.I.H.G.S.X.
0.4251.30.97Zm.7564.1.A1_atBM078962--4e-1At3g59060PIL6 (PHYTOCHROME INTERACTING FACTOR 3-LIKE 6)O.I.H.G.S.X.
0.3945.60.97Zm.9322.1.A1_atBM338181--6e+0At5g43070WPP1 (WPP domain protein 1)O.I.H.G.S.X.
0.3945.60.98Zm.9989.1.A1_atBM332236DNA binding protein-5e+0At5g03090unknown proteinO.I.H.G.S.X.
0.3742.30.97Zm.2631.1.S1_atAY107698.1hypothetical protein LOC100191885-5e-5At2g21730CAD2 (CINNAMYL ALCOHOL DEHYDROGENASE HOMOLOG 2)O.I.H.G.S.X.
0.3538.90.97Zm.6105.1.S1_atBG517834--4e+0At2g27280unknown proteinO.I.H.G.S.X.
0.3233.40.97Zm.10872.1.A1_atBM075104--1e-8At1g59990DEAD/DEAH box helicase, putative (RH22)O.I.H.G.S.X.

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Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
15.499.0GSM320453protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
14.498.9GSM320455protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
14.298.8GSM320447protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
12.898.7GSM320449protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
12.698.7GSM320454protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
12.498.7GSM320448protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
5.396.9GSM320452protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
5.196.8GSM320451protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
4.996.7GSM320450protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
3.494.9GSM320457protocol: Methylation filtration (MF) - genotype: B73 maize inbred - rep2GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera



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