Co-expression analysis

Gene ID Zm.9524.1.A1_at
Gene name hypothetical protein LOC100277965
Homology with ArabidopsisSimilar to At4g23610: unknown protein (HF=2e+0)
Module size 6 genes
NF 0.24
%ile 19.5

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.5065.70.99Zm.9524.1.A1_atBM276789hypothetical protein LOC100277965-2e+0At4g23610unknown proteinO.I.H.G.S.X.
0.4759.90.99Zm.17334.1.A1_atCK370011--1e+1Atcg00420-O.I.H.G.S.X.
0.2014.20.99Zm.16578.1.A1_a_atCK369163--3e-1At5g37820NIP4O.I.H.G.S.X.
0.2014.20.99Zm.9732.1.S1_atAY108025.1drought-induced protein 1-6e-1At4g17800DNA-binding protein-relatedO.I.H.G.S.X.
0.1811.60.99Zm.11891.1.A1_atBM381583helix-loop-helix DNA-binding domain containing protein-6e-2At5g42420transporter-relatedO.I.H.G.S.X.
0.1811.60.99Zm.7905.1.S1_atBM078113hypothetical protein LOC100193292-6e-15At1g09340CRB (CHLOROPLAST RNA BINDING)O.I.H.G.S.X.

VF%ileCCGene IDRepr. IDGene nameFunc.EvAGI codeArabidopsis gene nameO.I.H.G.S.X.Other DB
0.5065.70.99Zm.5860.1.A1_a_atCK826714Hypothetical protein LOC100191520-2e-14At3g02090mitochondrial processing peptidase beta subunit, putativeO.I.H.G.S.X.
0.4455.70.99Zm.13982.1.S1_atAY104726.1hypothetical protein LOC100272291-2e-17At2g25840OVA4 (ovule abortion 4)O.I.H.G.S.X.
0.4455.70.99Zm.8446.1.A1_atCD436884hypothetical protein LOC100194006 /// hypothetical protein LOC100276606-5e-11At1g32070ATNSI (NUCLEAR SHUTTLE INTERACTING)O.I.H.G.S.X.
0.4455.70.99Zm.8449.1.A1_atCK828099hypothetical protein LOC100276511-8e-1At3g61070PEX11EO.I.H.G.S.X.
0.4048.50.99Zm.6821.1.A1_atAI396519hypothetical protein LOC100272815-7e+0At3g44805-O.I.H.G.S.X.
0.3538.90.99Zm.889.1.A1_s_atM55021.1--2e-12At4g38740ROC1 (ROTAMASE CYP 1)O.I.H.G.S.X.
0.3336.00.98Zm.16766.1.A1_atAY104512.1small nuclear ribonucleoprotein Sm D1-2e-21At3g07590small nuclear ribonucleoprotein D1, putative / snRNP core protein D1, putative / Sm protein D1, putativeO.I.H.G.S.X.
0.3336.00.98Zm.1056.2.A1_atAY106535.1--5e-13At5g6230040S ribosomal protein S20 (RPS20C)O.I.H.G.S.X.
0.3336.00.99ZmAffx.1031.1.S1_atAI881675--2e-1At2g24490RPA2 (REPLICON PROTEIN A2)O.I.H.G.S.X.
0.3336.00.99Zm.1247.1.S1_atBE575051EARLY flowering 4 protein-4e+0At3g17570F-box family proteinO.I.H.G.S.X.
0.3131.60.98ZmAffx.741.1.A1_s_atAI665644--5e-3Atcg00810-O.I.H.G.S.X.
0.3131.60.99Zm.11935.1.A1_atBM381982--6e-1At1g25420unknown proteinO.I.H.G.S.X.
0.2928.10.99ZmAffx.844.1.S1_atAI770609--1e-1At5g59820RHL41 (RESPONSIVE TO HIGH LIGHT 41)O.I.H.G.S.X.
0.2724.60.98Zm.16372.1.S1_atCF273371--1e+0At4g33690unknown proteinO.I.H.G.S.X.
0.2521.30.97ZmAffx.944.1.A1_atAI820414--2e-10At3g57150NAP57 (Arabidopsis thaliana homologue of NAP57)O.I.H.G.S.X.
0.2521.30.99Zm.13456.2.A1_atAY111230.1Hypothetical protein LOC100194201-5e+0At3g50520phosphoglycerate/bisphosphoglycerate mutase family proteinO.I.H.G.S.X.


Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
12.998.7GSM320455protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
12.598.7GSM320450protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
12.398.7GSM320452protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
12.198.6GSM320453protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
12.198.6GSM320451protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
11.898.6GSM320448protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
10.898.5GSM320447protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
10.098.4GSM320449protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
9.898.3GSM320454protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
2.492.2GSM320457protocol: Methylation filtration (MF) - genotype: B73 maize inbred - rep2GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera



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