Co-expression analysis

Gene ID Zm.9524.1.A1_at
Gene name hypothetical protein LOC100277965
Homology with ArabidopsisSimilar to At4g23610: unknown protein (HF=2e+0)
Module size 6 genes
NF 0.24
%ile 19.5

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.5065.70.99Zm.9524.1.A1_atBM276789hypothetical protein LOC100277965-2e+0At4g23610unknown proteinO.I.H.G.S.X.
0.4759.90.99Zm.17334.1.A1_atCK370011--1e+1Atcg00420-O.I.H.G.S.X.
0.2014.20.99Zm.16578.1.A1_a_atCK369163--3e-1At5g37820NIP4O.I.H.G.S.X.
0.2014.20.99Zm.9732.1.S1_atAY108025.1drought-induced protein 1-6e-1At4g17800DNA-binding protein-relatedO.I.H.G.S.X.
0.1811.60.99Zm.11891.1.A1_atBM381583helix-loop-helix DNA-binding domain containing protein-6e-2At5g42420transporter-relatedO.I.H.G.S.X.
0.1811.60.99Zm.7905.1.S1_atBM078113hypothetical protein LOC100193292-6e-15At1g09340CRB (CHLOROPLAST RNA BINDING)O.I.H.G.S.X.

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Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
12.998.7GSM320455protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
12.598.7GSM320450protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
12.398.7GSM320452protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
12.198.6GSM320453protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
12.198.6GSM320451protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
11.898.6GSM320448protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
10.898.5GSM320447protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
10.098.4GSM320449protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
9.898.3GSM320454protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
2.492.2GSM320457protocol: Methylation filtration (MF) - genotype: B73 maize inbred - rep2GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO

Inter-species module comparison

A co-expression module including the poplar gene, PtpAffx.217491.1.S1_at, orthologous to the query gene, Zm.9524.1.A1_at

VF%ileGene IDRepr. IDGene NameFunc.EvAGI codeArabidopsis gene nameO.I.H.G.S.X.Other DB
0.6187.0PtpAffx.217491.1.S1_atAt4g23610--4e+0At1g12180-O.I.H.G.S.X.
0.5078.6PtpAffx.214817.1.S1_atAt4g23610hypothetical protein-1e-2At5g53860emb2737 (embryo defective 2737)O.I.H.G.S.X.
0.4471.9PtpAffx.215389.1.S1_atAt4g23610hypothetical protein-8e+0At3g06100NIP7O.I.H.G.S.X.
0.4369.7PtpAffx.215276.1.S1_atAt4g23610--2e+0At4g20520RNA binding / RNA-directed DNA polymeraseO.I.H.G.S.X.
0.3255.2PtpAffx.217331.1.S1_atAt4g23610hypothetical protein-1e+0At1g05290transcription factorO.I.H.G.S.X.
0.3153.7PtpAffx.225864.1.S1_atAt4g23610hypothetical protein-1e+0At4g16500cysteine protease inhibitor family protein / cystatin family proteinO.I.H.G.S.X.
0.2850.5PtpAffx.203936.1.S1_atAt4g23610hypothetical protein-7e-1At3g06740zinc finger (GATA type) family proteinO.I.H.G.S.X.
0.2441.8PtpAffx.214821.1.S1_atAt4g23610hypothetical protein-5e-54At1g53040unknown proteinO.I.H.G.S.X.
0.1525.3PtpAffx.27445.1.S1_atAt4g23610--8e-1At3g10300calcium-binding EF hand family proteinO.I.H.G.S.X.

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Triticum_aestivum
Vitis_vinifera



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