Co-expression analysis

Gene ID Zm.9524.1.A1_at
Gene name hypothetical protein LOC100277965
Homology with ArabidopsisSimilar to At4g23610: unknown protein (HF=2e+0)
Module size 6 genes
NF 0.24
%ile 19.5

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.5065.70.99Zm.9524.1.A1_atBM276789hypothetical protein LOC100277965-2e+0At4g23610unknown proteinO.I.H.G.S.X.
0.4759.90.99Zm.17334.1.A1_atCK370011--1e+1Atcg00420-O.I.H.G.S.X.
0.2014.20.99Zm.16578.1.A1_a_atCK369163--3e-1At5g37820NIP4O.I.H.G.S.X.
0.2014.20.99Zm.9732.1.S1_atAY108025.1drought-induced protein 1-6e-1At4g17800DNA-binding protein-relatedO.I.H.G.S.X.
0.1811.60.99Zm.11891.1.A1_atBM381583helix-loop-helix DNA-binding domain containing protein-6e-2At5g42420transporter-relatedO.I.H.G.S.X.
0.1811.60.99Zm.7905.1.S1_atBM078113hypothetical protein LOC100193292-6e-15At1g09340CRB (CHLOROPLAST RNA BINDING)O.I.H.G.S.X.

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Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
12.998.7GSM320455protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
12.598.7GSM320450protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
12.398.7GSM320452protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
12.198.6GSM320453protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
12.198.6GSM320451protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
11.898.6GSM320448protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
10.898.5GSM320447protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
10.098.4GSM320449protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
9.898.3GSM320454protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
2.492.2GSM320457protocol: Methylation filtration (MF) - genotype: B73 maize inbred - rep2GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO

Inter-species module comparison

A co-expression module including the barley gene, Contig19293_at, orthologous to the query gene, Zm.9524.1.A1_at

VF%ileGene IDRepr. IDGene NameFunc.EvAGI codeArabidopsis gene nameO.I.H.G.S.X.Other DB
0.9198.1Contig19293_atAt4g23610--5e-1At1g19960-O.I.H.G.S.X.
0.7187.1Contig21980_atAt4g23610--1e-1At3g24450copper-binding family proteinO.I.H.G.S.X.
0.6380.3EBro02_SQ001_G03_atAt4g23610--8e-1At5g39730avirulence-responsive protein-related / avirulence induced gene (AIG) protein-relatedO.I.H.G.S.X.
0.5572.0HVSMEl0002J05r2_atAt4g23610--5e+0At5g37730unknown proteinO.I.H.G.S.X.
0.4661.0Contig7450_atAt4g23610--7e+0At3g21055PSBTN (photosystem II subunit T)O.I.H.G.S.X.
0.3138.6Contig7448_s_atAt4g23610--1e-1At1g78340ATGSTU22 (GLUTATHIONE S-TRANSFERASE TAU 22)O.I.H.G.S.X.

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera



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