Co-expression analysis

Gene ID	Zm.9503.1.A1_at
Gene name	hypothetical protein LOC100191795
Homology with Arabidopsis	Similar to At1g63700: YDA (YODA) (HF=2e-3)
Module size	11 genes
NF	0.25
%ile	20.3

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.67	85.8	0.92	Zm.9503.1.A1_at	BM269403	hypothetical protein LOC100191795	-	2e-3	At1g63700	YDA (YODA)	O.I.	H.G.	S.X.	Please select
0.33	36.0	0.95	Zm.17235.1.S1_at	CK827663	-	-	1e+1	At5g07560	GRP20 (GLYCINE-RICH PROTEIN 20)	O.I.	H.G.	S.X.	Please select
0.29	28.1	0.95	Zm.5507.1.S1_at	CN071496	-	-	5e+0	At5g02420	unknown protein	O.I.	H.G.	S.X.	Please select
0.29	28.1	0.95	Zm.2812.1.S1_at	AW067476	-	-	3e+0	At3g48020	-	O.I.	H.G.	S.X.	Please select
0.29	28.1	0.97	Zm.770.1.A1_at	CF058911	-	-	2e-1	At5g14970	unknown protein	O.I.	H.G.	S.X.	Please select
0.27	24.6	0.96	Zm.15899.2.A1_x_at	BM334937	hypothetical protein LOC100193182	-	5e-1	At1g56555	unknown protein	O.I.	H.G.	S.X.	Please select
0.27	24.6	0.95	Zm.13251.1.A1_at	AI737641	sugary1	-	1e-37	At2g39930	ISA1 (ISOAMYLASE 1)	O.I.	H.G.	S.X.	Please select
0.26	22.7	0.95	Zm.5466.3.A1_at	AI665910	hypothetical protein LOC100276605	-	9e-2	At1g20450	ERD10 (EARLY RESPONSIVE TO DEHYDRATION 10)	O.I.	H.G.	S.X.	Please select
0.17	10.6	0.96	Zm.46.1.A1_s_at	BM351264	glutamine synthetase4 /// glutamine synthetase5	-	3e-43	At3g17820	ATGSKB6	O.I.	H.G.	S.X.	Please select
0.15	8.6	0.96	Zm.13208.1.S1_at	CA402017	protein binding protein	-	2e-1	At1g07000	ATEXO70B2 (exocyst subunit EXO70 family protein B2)	O.I.	H.G.	S.X.	Please select
0.11	5.3	0.95	Zm.7154.1.A1_at	AY111597.1	-	-	4e-7	At3g61490	glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
9.5	98.3	GSM320447	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
7.7	97.9	GSM320448	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
7.0	97.7	GSM320449	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
6.9	97.7	GSM320455	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
6.4	97.5	GSM320451	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
6.1	97.4	GSM320450	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
6.0	97.3	GSM320454	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
5.9	97.3	GSM320453	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
5.8	97.2	GSM320452	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
2.5	92.6	GSM375788	Deep-sowing 10d treatment Control, biological rep1	GSE15048	Gibberellin-induced gene expression in maize mesocotyl under deep-sowing condition

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Vitis_vinifera

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