Co-expression analysis

Gene ID	Zm.947.1.A1_at
Gene name
Homology with Arabidopsis	Similar to At3g17180: scpl33 (serine carboxypeptidase-like 33) (HF=2e-2)
Module size	6 genes
NF	0.48
%ile	61.2

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.91	99.0	0.97	Zm.947.1.A1_at	BF733123	-	-	2e-2	At3g17180	scpl33 (serine carboxypeptidase-like 33)	O.I.	H.G.	S.X.	Please select
0.83	95.6	0.97	Zm.9621.1.A1_at	BM333959	ethylene-responsive transcription factor 3	-	4e+0	At1g69490	NAP (NAC-like, activated by AP3/PI)	O.I.	H.G.	S.X.	Please select
0.71	88.2	0.97	Zm.9620.1.A1_at	CA403653	alginate regulatory protein AlgP	-	2e+0	At1g11850	unknown protein	O.I.	H.G.	S.X.	Please select
0.50	65.7	0.98	Zm.11836.1.A1_s_at	BM381136	hypothetical protein LOC100193763	-	3e-1	At1g52470	hydrolase	O.I.	H.G.	S.X.	Please select
0.32	33.4	0.98	Zm.9117.1.A1_at	CF636944	hypothetical protein LOC100274722	-	4e-1	At1g71865	unknown protein	O.I.	H.G.	S.X.	Please select
0.13	6.8	0.98	Zm.9333.1.A1_at	BM347779	-	-	1e+0	At3g58720	zinc finger (C3HC4-type RING finger) family protein	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
13.2	98.8	GSM320455	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
12.5	98.7	GSM320453	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
11.5	98.6	GSM320451	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
11.5	98.6	GSM320448	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
11.4	98.5	GSM320450	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
11.2	98.5	GSM320449	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
11.1	98.5	GSM320447	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
10.7	98.5	GSM320452	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
10.5	98.4	GSM320454	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
3.7	95.4	GSM320456	protocol: Methylation filtration (MF) - genotype: B73 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes

Inter-species module comparison

A co-expression module including the grape gene, 1621544_at, orthologous to the query gene, Zm.947.1.A1_at

VF	%ile	Gene ID	Repr. ID	Gene Name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.67	87.9	1621544_at	At3g17180	-	-	3e-1	At3g13700	RNA-binding protein, putative	O.I.	H.G.	S.X.	Please select
0.26	32.0	1613471_at	At3g17180	hypothetical protein LOC100256515	-	5e-1	At4g25780	pathogenesis-related protein, putative	O.I.	H.G.	S.X.	Please select
0.22	25.6	1611970_at	At3g17180	hypothetical protein LOC100253211	-	1e-1	At5g11910	esterase/lipase/thioesterase family protein	O.I.	H.G.	S.X.	Please select
0.08	8.5	1608571_s_at	At3g17180	hypothetical protein LOC100243125 /// hypothetical protein LOC100256803	-	6e-2	At5g52160	protease inhibitor/seed storage/lipid transfer protein (LTP) family protein	O.I.	H.G.	S.X.	Please select
0.06	6.8	1613054_at	At3g17180	hypothetical protein LOC100257133	-	1e-25	At4g34760	auxin-responsive family protein	O.I.	H.G.	S.X.	Please select
0.02	3.2	1621038_at	At3g17180	hypothetical protein LOC100245214	-	6e-22	At1g29930	CAB1 (CHLOROPHYLL A/B BINDING PROTEIN 1)	O.I.	H.G.	S.X.	Please select

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

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