Co-expression analysis

Gene ID Zm.947.1.A1_at
Gene name
Homology with ArabidopsisSimilar to At3g17180: scpl33 (serine carboxypeptidase-like 33) (HF=2e-2)
Module size 6 genes
NF 0.48
%ile 61.2

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.9199.00.97Zm.947.1.A1_atBF733123--2e-2At3g17180scpl33 (serine carboxypeptidase-like 33)O.I.H.G.S.X.
0.8395.60.97Zm.9621.1.A1_atBM333959ethylene-responsive transcription factor 3-4e+0At1g69490NAP (NAC-like, activated by AP3/PI)O.I.H.G.S.X.
0.7188.20.97Zm.9620.1.A1_atCA403653alginate regulatory protein AlgP-2e+0At1g11850unknown proteinO.I.H.G.S.X.
0.5065.70.98Zm.11836.1.A1_s_atBM381136hypothetical protein LOC100193763-3e-1At1g52470hydrolaseO.I.H.G.S.X.
0.3233.40.98Zm.9117.1.A1_atCF636944hypothetical protein LOC100274722-4e-1At1g71865unknown proteinO.I.H.G.S.X.
0.136.80.98Zm.9333.1.A1_atBM347779--1e+0At3g58720zinc finger (C3HC4-type RING finger) family proteinO.I.H.G.S.X.

Click More genes



Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
13.298.8GSM320455protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
12.598.7GSM320453protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
11.598.6GSM320451protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
11.598.6GSM320448protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
11.498.5GSM320450protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
11.298.5GSM320449protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
11.198.5GSM320447protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
10.798.5GSM320452protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
10.598.4GSM320454protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
3.795.4GSM320456protocol: Methylation filtration (MF) - genotype: B73 maize inbred - rep1GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO

Inter-species module comparison

A co-expression module including the barley gene, Contig4555_at, orthologous to the query gene, Zm.947.1.A1_at

VF%ileGene IDRepr. IDGene NameFunc.EvAGI codeArabidopsis gene nameO.I.H.G.S.X.Other DB
0.6480.9Contig4555_atAt3g17180--4e-12At3g63470scpl40 (serine carboxypeptidase-like 40)O.I.H.G.S.X.
0.6784.7HK05B20r_s_atAt3g17180--1e+0At1g27000bZIP family transcription factorO.I.H.G.S.X.
0.6077.3Contig4561_atAt3g17180--2e-69At5g58290RPT3 (REGULATORY PARTICLE TRIPLE-A ATPASE 3)O.I.H.G.S.X.
0.6077.3Contig19727_atAt3g17180--1e+0At5g51790basix helix-loop-helix (bHLH) family proteinO.I.H.G.S.X.
0.5572.0Contig23245_atAt3g17180--5e-4At5g60550GRIK2 (GEMINIVIRUS REP INTERACTING KINASE 2)O.I.H.G.S.X.
0.5470.3Contig15199_atAt3g17180--4e+0At2g40150-O.I.H.G.S.X.
0.5268.3Contig4560_x_atAt3g17180--2e-1At1g29000heavy-metal-associated domain-containing proteinO.I.H.G.S.X.
0.5268.3Contig25106_atAt3g17180--4e+0At5g64990AtRABH1a (Arabidopsis Rab GTPase homolog H1a)O.I.H.G.S.X.
0.4458.9Contig25138_atAt3g17180--3e+0At1g19740ATP-dependent protease La (LON) domain-containing proteinO.I.H.G.S.X.
0.3849.5Contig23295_atAt3g17180--5e+0At3g10720pectinesterase, putativeO.I.H.G.S.X.
0.3138.6Contig20268_atAt3g17180--4e-1At5g12140ATCYS1 (A. thaliana cystatin-1)O.I.H.G.S.X.

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera



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