Co-expression analysis

Gene ID	Zm.9407.1.A1_at
Gene name	plastid-lipid-associated protein 2
Homology with Arabidopsis	Similar to At4g04020: FIB (FIBRILLIN) (HF=3e-2)
Module size	22 genes
NF	0.28
%ile	24.4

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.86	96.3	0.83	Zm.9407.1.A1_at	BM268507	plastid-lipid-associated protein 2	-	3e-2	At4g04020	FIB (FIBRILLIN)	O.I.	H.G.	S.X.	Please select
0.52	67.3	0.88	ZmAffx.347.1.A1_at	AI670534	-	-	1e+1	At4g01995	unknown protein	O.I.	H.G.	S.X.	Please select
0.45	56.4	0.90	ZmAffx.314.1.A1_at	AI670496	-	-	3e+0	At3g45960	ATEXLA3 (arabidopsis thaliana expansin-like a3)	O.I.	H.G.	S.X.	Please select
0.38	44.2	0.85	Zm.1248.1.A1_at	CF649214	hypothetical protein LOC100274169	-	1e+0	At3g16240	DELTA-TIP	O.I.	H.G.	S.X.	Please select
0.34	37.2	0.91	ZmAffx.434.1.A1_at	AI676950	gpm2 protein	-	2e-1	At3g01790	ribosomal protein L13 family protein	O.I.	H.G.	S.X.	Please select
0.33	36.0	0.90	Zm.9763.1.A1_at	BM338608	-	-	1e+0	At3g10590	myb family transcription factor	O.I.	H.G.	S.X.	Please select
0.33	36.0	0.92	ZmAffx.715.1.S1_at	AI739762	-	-	2e-1	At1g04670	unknown protein	O.I.	H.G.	S.X.	Please select
0.32	33.4	0.90	Zm.1116.1.S1_at	AY109800.1	-	-	2e+0	At1g03180	unknown protein	O.I.	H.G.	S.X.	Please select
0.30	29.8	0.92	ZmAffx.940.1.S1_at	AI820350	hypothetical protein LOC100217004	-	8e-4	At4g00690	ULP1B (UB-LIKE PROTEASE 1B)	O.I.	H.G.	S.X.	Please select
0.29	28.1	0.94	ZmAffx.19.1.A1_at	AI586648	PWWP domain containing protein	-	1e+1	At1g48745	unknown protein	O.I.	H.G.	S.X.	Please select
0.29	28.1	0.90	ZmAffx.338.1.S1_at	AI670525	-	-	3e+0	At4g12460	ORP2B (OSBP(OXYSTEROL BINDING PROTEIN)-RELATED PROTEIN 2B)	O.I.	H.G.	S.X.	Please select
0.27	24.6	0.90	Zm.9690.1.A1_at	BM348785	-	-	2e-2	At4g17390	60S ribosomal protein L15 (RPL15B)	O.I.	H.G.	S.X.	Please select
0.24	19.8	0.88	ZmAffx.664.1.S1_at	AI734304	-	-	4e+0	At1g08790	unknown protein	O.I.	H.G.	S.X.	Please select
0.24	19.8	0.91	ZmAffx.628.1.S1_at	AI715056	-	-	1e+1	At5g13340	unknown protein	O.I.	H.G.	S.X.	Please select
0.21	15.5	0.87	ZmAffx.366.1.A1_at	AI673846	-	-	5e+0	At3g63350	AT-HSFA7B	O.I.	H.G.	S.X.	Please select
0.20	14.2	0.91	Zm.13447.1.S1_at	CK786856	chaperone protein dnaJ 10	-	2e-11	At1g21080	DNAJ heat shock N-terminal domain-containing protein	O.I.	H.G.	S.X.	Please select
0.20	14.2	0.85	Zm.14790.1.A1_at	BM079805	-	-	2e+1	At5g42635	glycine-rich protein	O.I.	H.G.	S.X.	Please select
0.20	14.2	0.92	ZmAffx.302.1.S1_at	AI670435	-	-	8e-1	At1g67090	RBCS1A (RIBULOSE BISPHOSPHATE CARBOXYLASE SMALL CHAIN 1A)	O.I.	H.G.	S.X.	Please select
0.19	12.8	0.90	ZmAffx.33.1.A1_at	AI657429	t-snare	-	2e-1	At4g00890	proline-rich family protein	O.I.	H.G.	S.X.	Please select
0.16	9.4	0.90	Zm.17234.1.S1_at	CK145263	hypothetical protein LOC100192939	-	2e-4	At1g26560	BGLU40 (BETA GLUCOSIDASE 40)	O.I.	H.G.	S.X.	Please select
0.16	9.4	0.91	Zm.9756.1.A1_at	BM338065	-	-	5e+0	At5g38800	AtbZIP43 (Arabidopsis thaliana basic leucine-zipper 43)	O.I.	H.G.	S.X.	Please select
0.07	2.9	0.90	ZmAffx.654.1.S1_at	AI715082	-	-	1e+1	At5g29210	unknown protein	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
13.3	98.8	GSM320455	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
11.0	98.5	GSM320453	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
8.5	98.1	GSM320454	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
8.5	98.1	GSM320448	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
7.6	97.9	GSM320449	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
7.6	97.9	GSM320450	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
7.6	97.9	GSM320452	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
7.1	97.7	GSM320447	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
6.9	97.7	GSM320451	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
2.7	93.2	GSM320441	protocol: mRNA - genotype: Mo17 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Vitis_vinifera

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