Co-expression analysis

Gene ID Zm.9389.3.A1_a_at
Gene name catalytic/ protein phosphatase type 2C
Homology with ArabidopsisSimilar to At5g43410: ethylene-responsive factor, putative (HF=4e+0)
Module size 16 genes
NF 0.76
%ile 95.6

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.6785.80.98Zm.9389.3.A1_a_atCF633932catalytic/ protein phosphatase type 2C-4e+0At5g43410ethylene-responsive factor, putativeO.I.H.G.S.X.
0.8495.80.98Zm.2199.3.A1_atBM074529hypothetical protein LOC100276113-1e-1At5g17460unknown proteinO.I.H.G.S.X.
0.8395.60.98Zm.5867.2.A1_atAY104476.1--1e+1At4g19645-O.I.H.G.S.X.
0.8194.30.98ZmAffx.952.1.A1_atAI833424ubiquitin-protein ligase-7e+0At2g42680MBF1A (MULTIPROTEIN BRIDGING FACTOR 1A)O.I.H.G.S.X.
0.8094.00.97Zm.12699.1.A1_atBQ487145hypothetical protein LOC100272460-1e+0At2g33793unknown proteinO.I.H.G.S.X.
0.7992.80.98Zm.7780.1.A1_atCD433445hypothetical protein LOC100274595-1e-7At4g19230CYP707A1O.I.H.G.S.X.
0.7792.10.98Zm.5866.1.S1_atCF044154AP-1 complex subunit sigma-2-5e-38At2g17380AP19O.I.H.G.S.X.
0.7691.10.98Zm.10500.1.S1_atCA827201--1e+0At1g07485unknown proteinO.I.H.G.S.X.
0.7590.80.98Zm.5119.2.A1_atCF637544--2e+0At5g36140CYP716A2O.I.H.G.S.X.
0.7490.30.98Zm.18021.1.S1_atCK368623Hypothetical protein LOC100194051-4e+0At3g50845-O.I.H.G.S.X.
0.7490.30.97Zm.5655.2.A1_a_atAY107995.1hypothetical protein LOC100272896-4e-9At2g14910unknown proteinO.I.H.G.S.X.
0.7188.20.98Zm.17570.1.A1_atCK144848hypothetical protein LOC100191532-5e+0At1g21928-O.I.H.G.S.X.
0.7188.20.98Zm.949.1.A1_s_atCF624182hypothetical protein LOC100280024-1e-1At5g15970KIN2O.I.H.G.S.X.
0.7188.20.98ZmAffx.570.1.A1_atAI714682hypothetical protein LOC100191413-1e-2At2g04280unknown proteinO.I.H.G.S.X.
0.5976.10.97Zm.5864.1.A1_atAW225271--3e-22At5g53480importin beta-2, putativeO.I.H.G.S.X.
0.5775.10.98Zm.9897.1.A1_atBM331892hypothetical protein LOC100279693-6e-3At2g34850MEE25 (maternal effect embryo arrest 25)O.I.H.G.S.X.

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Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
18.899.2GSM320451protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
18.799.2GSM320450protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
17.699.1GSM320455protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
17.299.1GSM320452protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
15.699.0GSM320447protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
14.798.9GSM320453protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
14.698.9GSM320449protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
13.898.8GSM320454protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
13.798.8GSM320448protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
3.995.7GSM320457protocol: Methylation filtration (MF) - genotype: B73 maize inbred - rep2GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera



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