Co-expression analysis

Gene ID	Zm.9386.1.A1_at
Gene name	hypothetical protein LOC100275351
Homology with Arabidopsis	Similar to At3g49430: SRp34a (Ser/Arg-rich protein 34a) (HF=2e-2)
Module size	6 genes
NF	0.57
%ile	76.1

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.91	99.0	0.98	Zm.9386.1.A1_at	BQ539064	hypothetical protein LOC100275351	-	2e-2	At3g49430	SRp34a (Ser/Arg-rich protein 34a)	O.I.	H.G.	S.X.	Please select
0.73	89.9	0.98	Zm.4340.1.A1_at	M76685.1	orange pericarp2	-	2e-29	At4g27070	TSB2 (TRYPTOPHAN SYNTHASE BETA-SUBUNIT 2)	O.I.	H.G.	S.X.	Please select
0.67	85.8	0.98	Zm.5691.1.A1_at	AW065747	-	-	7e-4	At3g13850	LBD22 (LOB DOMAIN-CONTAINING PROTEIN 22)	O.I.	H.G.	S.X.	Please select
0.61	79.5	0.98	ZmAffx.1081.1.A1_at	AI948368	spotted leaf protein 11	-	1e+1	At5g23950	C2 domain-containing protein	O.I.	H.G.	S.X.	Please select
0.48	61.3	0.97	ZmAffx.1036.1.S1_at	AI881726	-	-	1e-1	At2g43795	unknown protein	O.I.	H.G.	S.X.	Please select
0.31	31.6	0.98	Zm.10867.1.A1_at	BM073190	-	-	8e-2	At2g20350	AP2 domain-containing transcription factor, putative	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
17.3	99.1	GSM320441	protocol: mRNA - genotype: Mo17 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
15.8	99.0	GSM320454	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
15.4	99.0	GSM320453	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
14.1	98.8	GSM320455	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
12.9	98.7	GSM320443	protocol: mRNA - genotype: Mo17 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
8.2	98.0	GSM320448	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
8.1	98.0	GSM320450	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
7.7	97.9	GSM320451	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
7.7	97.9	GSM320449	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
7.5	97.8	GSM320444	protocol: mRNA - genotype: CML69 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Vitis_vinifera

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