Co-expression analysis

Gene ID	Zm.9278.1.A1_at
Gene name
Homology with Arabidopsis	Similar to At3g22530: unknown protein (HF=1e+0)
Module size	19 genes
NF	0.29
%ile	26.3

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.72	88.6	0.90	Zm.9278.1.A1_at	BM348240	-	-	1e+0	At3g22530	unknown protein	O.I.	H.G.	S.X.	Please select
0.41	49.7	0.93	Zm.5787.2.S1_at	AY107157.1	hypothetical protein LOC100273050	-	4e-1	At5g48790	unknown protein	O.I.	H.G.	S.X.	Please select
0.40	48.5	0.92	Zm.8032.1.A1_at	AI737866	acyl-CoA synthetase long-chain family member 3	-	2e-14	At2g04350	long-chain-fatty-acid--CoA ligase family protein / long-chain acyl-CoA synthetase family protein (LACS8)	O.I.	H.G.	S.X.	Please select
0.38	44.2	0.93	Zm.4136.1.A1_at	BM080315	amino acid binding protein	-	4e-1	At4g17730	SYP23 (SYNTAXIN OF PLANTS 23)	O.I.	H.G.	S.X.	Please select
0.37	42.3	0.93	Zm.9318.1.A1_at	BM333084	-	-	1e+0	At1g02065	SPL8 (SQUAMOSA PROMOTER BINDING PROTEIN-LIKE 8)	O.I.	H.G.	S.X.	Please select
0.36	41.3	0.93	Zm.12666.1.S1_x_at	AY536122.1	meg2 protein	-	3e-1	At1g07480	transcription factor IIA large subunit / TFIIA large subunit (TFIIA-L)	O.I.	H.G.	S.X.	Please select
0.33	36.0	0.93	Zm.10645.1.S1_at	BQ538784	-	-	3e+0	At5g40700	unknown protein	O.I.	H.G.	S.X.	Please select
0.26	22.7	0.95	Zm.1194.1.S1_at	CA403262	fasciclin-like arabinogalactan protein 10	-	2e-1	At5g52930	unknown protein	O.I.	H.G.	S.X.	Please select
0.24	19.8	0.96	Zm.8119.1.S1_at	AY110313.1	-	-	8e-5	At1g03650	GCN5-related N-acetyltransferase (GNAT) family protein	O.I.	H.G.	S.X.	Please select
0.22	16.9	0.95	Zm.16859.1.A1_at	CF646302	hypothetical protein LOC100217299 /// ATP11 protein	-	8e+0	At4g03945	enzyme inhibitor/ pectinesterase	O.I.	H.G.	S.X.	Please select
0.22	16.9	0.95	Zm.9695.1.A1_at	BM335896	-	-	1e+0	At5g38310	unknown protein	O.I.	H.G.	S.X.	Please select
0.22	16.9	0.96	Zm.7914.1.A1_at	AY103800.1	hypothetical protein LOC100277669	-	5e-11	At3g21175	ZML1 (ZIM-LIKE 1)	O.I.	H.G.	S.X.	Please select
0.22	16.9	0.96	Zm.12143.1.S1_at	BI358874	-	-	2e+0	At5g55560	protein kinase family protein	O.I.	H.G.	S.X.	Please select
0.22	16.9	0.96	Zm.13611.1.S1_at	AW171965	-	-	6e-23	At5g13520	peptidase M1 family protein	O.I.	H.G.	S.X.	Please select
0.20	14.2	0.93	Zm.8081.1.A1_at	CA403539	-	-	3e+0	At2g27710	60S acidic ribosomal protein P2 (RPP2B)	O.I.	H.G.	S.X.	Please select
0.20	14.2	0.95	Zm.8514.1.A1_at	AY104758.1	PREG-like protein	-	5e+0	At5g35525	unknown protein	O.I.	H.G.	S.X.	Please select
0.17	10.6	0.95	Zm.811.1.A1_at	CA405132	cathepsin B-like cysteine proteinase 3	-	2e-23	At1g02305	cathepsin B-like cysteine protease, putative	O.I.	H.G.	S.X.	Please select
0.16	9.4	0.93	Zm.3403.1.S1_at	CF637025	-	-	2e+0	At2g20362	unknown protein	O.I.	H.G.	S.X.	Please select
0.15	8.6	0.94	Zm.569.1.A1_at	AF239819.1	protein kinase CK2 catalytic subunit CK2 alpha-3	-	3e-96	At5g67380	CKA1 (CASEIN KINASE ALPHA 1)	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
12.2	98.6	GSM320455	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
10.4	98.4	GSM320451	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
10.4	98.4	GSM320448	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
10.3	98.4	GSM320453	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
10.1	98.4	GSM320452	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
9.6	98.3	GSM320450	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
9.1	98.2	GSM320454	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
8.5	98.1	GSM320449	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
8.1	98.0	GSM320447	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
2.5	92.6	GSM202310	B73 19 day after pollination embryo tissue, biological replicate 1	GSE8179	Cis-transcriptional variation in maize inbred lines B73 and Mo17 leads to additive expression - Embryo data

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Vitis_vinifera

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