Co-expression analysis

Gene ID Zm.9264.1.A1_at
Gene name
Homology with ArabidopsisSimilar to At5g13190: - (HF=2e+0)
Module size 6 genes
NF 0.07
%ile 3.9

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.8094.00.91Zm.9264.1.A1_atBM267689--2e+0At5g13190-O.I.H.G.S.X.
0.3641.30.94Zm.16498.1.S1_a_atAY103577.1hypothetical protein LOC100193260-1e-109At5g55190RAN3 (RAN GTPASE 3)O.I.H.G.S.X.
0.2216.90.92Zm.11469.2.A1_a_atCF630843hypothetical protein LOC100279920-4e+0At3g20900unknown proteinO.I.H.G.S.X.
0.072.90.93Zm.8864.1.A1_s_atBM269430hypothetical protein LOC100278083-6e+0At4g13720inosine triphosphate pyrophosphatase, putative / HAM1 family proteinO.I.H.G.S.X.
0.062.30.91Zm.1906.1.S1_atAF239818.1protein kinase CK2 regulatory subunit CK2B3-4e-33At3g60250CKB3O.I.H.G.S.X.
0.020.70.92Zm.15894.1.A1_atBG873874--3e-14At4g27230HTA2 (histone H2A)O.I.H.G.S.X.

VF%ileCCGene IDRepr. IDGene nameFunc.EvAGI codeArabidopsis gene nameO.I.H.G.S.X.Other DB
0.4048.50.92Zm.13483.1.S1_atCO528023Hypothetical protein LOC100192840-2e+0At3g29970germination protein-relatedO.I.H.G.S.X.
0.3641.30.90Zm.12.1.S1_atAY047317.1modified zein precursor-4e-1At1g21930unknown proteinO.I.H.G.S.X.
0.3641.30.93Zm.1550.1.A1_atCD972755hypothetical protein LOC100194140-1e+1Atmg01020-O.I.H.G.S.X.
0.3336.00.92Zm.5804.1.A1_a_atCF626917hypothetical protein LOC100275467-4e-1At4g18970GDSL-motif lipase/hydrolase family proteinO.I.H.G.S.X.
0.3336.00.92Zm.4986.1.S1_atBG873746hypothetical protein LOC100279549-2e-91At3g29360UDP-glucose 6-dehydrogenase, putativeO.I.H.G.S.X.
0.3131.60.90Zm.18061.1.A1_atCK985852--1e+0At1g30795hydroxyproline-rich glycoprotein family proteinO.I.H.G.S.X.
0.3131.60.91Zm.6302.1.A1_atCO533765hypothetical protein LOC100192816-4e-1At2g03090ATEXPA15 (ARABIDOPSIS THALIANA EXPANSIN A15)O.I.H.G.S.X.
0.3029.80.86Zm.13911.1.S1_atAY109626.1potassium channel protein ZMK2-6e-3At4g18290KAT2 (POTASSIUM CHANNEL IN ARABIDOPSIS THALIANA 2)O.I.H.G.S.X.
0.2928.10.82Zm.9722.1.A1_atBM336730--1e+0At5g52890AT hook motif-containing proteinO.I.H.G.S.X.
0.2928.10.83Zm.4505.1.S1_atAY111153.1--2e-2At3g55600-O.I.H.G.S.X.
0.2928.10.85Zm.13913.1.S1_atAF073332.1replication origin activator 4-8e-11At5g46280DNA replication licensing factor, putativeO.I.H.G.S.X.
0.2928.10.92Zm.4140.1.S1_atBE552528hypothetical protein LOC100191980-2e-17At1g69790protein kinase, putativeO.I.H.G.S.X.
0.2928.10.93Zm.18995.1.A1_atCO528199--3e-1At1g47960C/VIF1 (CELL WALL / VACUOLAR INHIBITOR OF FRUCTOSIDASE 1)O.I.H.G.S.X.
0.2521.30.88Zm.3315.1.A1_atAY107581.1nitrilase-associated protein-2e-3At3g02180SP1L3 (SPIRAL 1-LIKE3)O.I.H.G.S.X.
0.2521.30.92Zm.14075.1.A1_atBG840438fiber protein Fb15-5e-1Atmg00050-O.I.H.G.S.X.


Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
29.699.8GSM320453protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
26.899.7GSM320455protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
22.999.5GSM320454protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
21.899.4GSM320447protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
20.199.3GSM320448protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
18.099.2GSM320449protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
13.898.8GSM320452protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
13.298.8GSM320451protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
9.398.2GSM320450protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
3.795.4GSM320457protocol: Methylation filtration (MF) - genotype: B73 maize inbred - rep2GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera



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