Co-expression analysis

Gene ID Zm.9237.1.A1_at
Gene name
Homology with ArabidopsisSimilar to At3g07750: 3' exoribonuclease family domain 1-containing protein (HF=4e-1)
Module size 6 genes
NF 0.56
%ile 74.7

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.7188.20.97Zm.9237.1.A1_atBM350875--4e-1At3g077503' exoribonuclease family domain 1-containing proteinO.I.H.G.S.X.
0.6381.10.97Zm.9238.1.A1_atCO533275--5e-2At2g23320WRKY15O.I.H.G.S.X.
0.5571.60.98Zm.6562.2.A1_a_atCK347763plasma membrane associated protein-6e+0At5g56990-O.I.H.G.S.X.
0.4455.70.98Zm.12789.1.A1_atCA398899--9e-3At3g04510LSH2 (LIGHT SENSITIVE HYPOCOTYLS 2)O.I.H.G.S.X.
0.4048.50.98Zm.14407.2.S1_atAW424519hypothetical protein LOC100272648-3e-140At1g56070LOS1O.I.H.G.S.X.
0.3538.90.98Zm.5166.1.S1_atAI612220--1e+0At2g19690PLA2-BETA (PHOSPHOLIPASE A2-BETA)O.I.H.G.S.X.

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Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
19.599.3GSM320450protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
16.099.0GSM320455protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
15.999.0GSM320451protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
15.899.0GSM320452protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
15.098.9GSM320453protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
13.298.8GSM320454protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
8.298.0GSM320449protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
7.497.8GSM320448protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
7.197.7GSM320447protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
4.796.5GSM320461protocol: Methylation filtration (MF) - genotype: Mo17 maize inbred - rep3GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO

Inter-species module comparison

A co-expression module including the wheat gene, TaAffx.52477.1.S1_at, orthologous to the query gene, Zm.9237.1.A1_at

VF%ileGene IDRepr. IDGene NameFunc.EvAGI codeArabidopsis gene nameO.I.H.G.S.X.Other DB
0.6081.0TaAffx.52477.1.S1_atAt3g07750--2e+0At5g62820integral membrane protein, putativeO.I.H.G.S.X.
0.5678.6Ta.27720.3.A1_atAt3g07750--1e-1At5g06280unknown proteinO.I.H.G.S.X.
0.4666.8Ta.30830.1.S1_atAt3g07750--1e+0At4g03170DNA bindingO.I.H.G.S.X.
0.4666.8TaAffx.77845.1.S1_atAt3g07750--3e-1At5g67500VDAC2 (VOLTAGE DEPENDENT ANION CHANNEL 2)O.I.H.G.S.X.
0.3956.1TaAffx.57313.1.S1_atAt3g07750--1e+0At5g44080bZIP transcription factor family proteinO.I.H.G.S.X.
0.3651.9TaAffx.78875.1.S1_atAt3g07750--3e+0At3g57250emsy N terminus domain-containing protein / ENT domain-containing proteinO.I.H.G.S.X.
0.3346.9TaAffx.28550.1.S1_atAt3g07750--2e-11At2g18020EMB2296 (embryo defective 2296)O.I.H.G.S.X.
0.3244.4TaAffx.5994.1.S1_atAt3g07750--1e+1At5g41400zinc finger (C3HC4-type RING finger) family proteinO.I.H.G.S.X.
0.2430.3RPTR-Ta-L36849-1_atAt3g07750--O.I.H.G.S.X.
0.2024.0Ta.30638.1.A1_s_atAt3g07750hypothetical protein LOC543393-2e-7At5g20350TIP1 (TIP GROWTH DEFECTIVE 1)O.I.H.G.S.X.
0.1922.4TaAffx.64310.1.A1_x_atAt3g07750--3e+0At1g48953unknown proteinO.I.H.G.S.X.
0.1821.0TaAffx.53068.1.S1_atAt3g07750--1e+0At1g32760glutaredoxin family proteinO.I.H.G.S.X.
0.1719.8Ta.19822.2.S1_atAt3g07750--1e-17At1g69960PP2A (SERINE/THREONINE PROTEIN PHOSPHATASE 2A)O.I.H.G.S.X.
0.1719.8Ta.4216.3.A1_atAt3g07750--1e+0At1g32400TOM2A (TOBAMOVIRUS MULTIPLICATION 2A)O.I.H.G.S.X.

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Vitis_vinifera



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