Co-expression analysis

Gene ID	Zm.9237.1.A1_at
Gene name
Homology with Arabidopsis	Similar to At3g07750: 3' exoribonuclease family domain 1-containing protein (HF=4e-1)
Module size	6 genes
NF	0.56
%ile	74.7

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.71	88.2	0.97	Zm.9237.1.A1_at	BM350875	-	-	4e-1	At3g07750	3' exoribonuclease family domain 1-containing protein	O.I.	H.G.	S.X.	Please select
0.63	81.1	0.97	Zm.9238.1.A1_at	CO533275	-	-	5e-2	At2g23320	WRKY15	O.I.	H.G.	S.X.	Please select
0.55	71.6	0.98	Zm.6562.2.A1_a_at	CK347763	plasma membrane associated protein	-	6e+0	At5g56990	-	O.I.	H.G.	S.X.	Please select
0.44	55.7	0.98	Zm.12789.1.A1_at	CA398899	-	-	9e-3	At3g04510	LSH2 (LIGHT SENSITIVE HYPOCOTYLS 2)	O.I.	H.G.	S.X.	Please select
0.40	48.5	0.98	Zm.14407.2.S1_at	AW424519	hypothetical protein LOC100272648	-	3e-140	At1g56070	LOS1	O.I.	H.G.	S.X.	Please select
0.35	38.9	0.98	Zm.5166.1.S1_at	AI612220	-	-	1e+0	At2g19690	PLA2-BETA (PHOSPHOLIPASE A2-BETA)	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
19.5	99.3	GSM320450	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
16.0	99.0	GSM320455	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
15.9	99.0	GSM320451	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
15.8	99.0	GSM320452	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
15.0	98.9	GSM320453	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
13.2	98.8	GSM320454	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
8.2	98.0	GSM320449	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
7.4	97.8	GSM320448	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
7.1	97.7	GSM320447	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
4.7	96.5	GSM320461	protocol: Methylation filtration (MF) - genotype: Mo17 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes

Inter-species module comparison

A co-expression module including the poplar gene, PtpAffx.30432.1.A1_at, orthologous to the query gene, Zm.9237.1.A1_at

VF	%ile	Gene ID	Repr. ID	Gene Name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.56	83.9	PtpAffx.30432.1.A1_at	At3g07750	-	-	1e+0	At2g35700	ERF38 (ERF FAMILY PROTEIN 38)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.57	84.2	PtpAffx.202098.1.S1_at	At3g07750	hypothetical protein	-	2e+0	At5g64880	unknown protein	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.40	67.0	PtpAffx.220330.1.S1_at	At3g07750	hypothetical protein	-	5e+0	At1g27140	ATGSTU14 (ARABIDOPSIS THALIANA GLUTATHIONE S-TRANSFERASE TAU 14)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.36	61.6	PtpAffx.202161.1.S1_at	At3g07750	hypothetical protein	-	2e+0	At3g29740	protein binding	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.22	38.3	PtpAffx.207604.1.S1_at	At3g07750	cytokinin biosynthetic isopentenyltransferase	-	3e-8	At3g23630	ATIPT7	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)
0.15	25.3	PtpAffx.221825.1.S1_at	At3g07750	hypothetical protein	-	1e-6	At5g58290	RPT3 (REGULATORY PARTICLE TRIPLE-A ATPASE 3)	O.I.	H.G.	S.X.	Please selecteFP Browser (expression)

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Triticum_aestivum

Vitis_vinifera

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