CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID Zm.9237.1.A1_at

Gene name
Homology with Arabidopsis Similar to At3g07750: 3' exoribonuclease family domain 1-containing protein (HF=4e-1)

Module size 6 genes

NF 0.56

%ile 74.7

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.71 88.2 0.97 Zm.9237.1.A1_at BM350875 - - 4e-1 At3g07750 3' exoribonuclease family domain 1-containing protein O.I. H.G. S.X.
0.63 81.1 0.97 Zm.9238.1.A1_at CO533275 - - 5e-2 At2g23320 WRKY15 O.I. H.G. S.X.
0.55 71.6 0.98 Zm.6562.2.A1_a_at CK347763 plasma membrane associated protein - 6e+0 At5g56990 - O.I. H.G. S.X.
0.44 55.7 0.98 Zm.12789.1.A1_at CA398899 - - 9e-3 At3g04510 LSH2 (LIGHT SENSITIVE HYPOCOTYLS 2) O.I. H.G. S.X.
0.40 48.5 0.98 Zm.14407.2.S1_at AW424519 hypothetical protein LOC100272648 - 3e-140 At1g56070 LOS1 O.I. H.G. S.X.
0.35 38.9 0.98 Zm.5166.1.S1_at AI612220 - - 1e+0 At2g19690 PLA2-BETA (PHOSPHOLIPASE A2-BETA) O.I. H.G. S.X.

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Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
19.5 99.3 GSM320450 protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1 GSE12770 Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
16.0 99.0 GSM320455 protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3 GSE12770 Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
15.9 99.0 GSM320451 protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2 GSE12770 Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
15.8 99.0 GSM320452 protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3 GSE12770 Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
15.0 98.9 GSM320453 protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1 GSE12770 Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
13.2 98.8 GSM320454 protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2 GSE12770 Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
8.2 98.0 GSM320449 protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3 GSE12770 Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
7.4 97.8 GSM320448 protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2 GSE12770 Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
7.1 97.7 GSM320447 protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1 GSE12770 Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
4.7 96.5 GSM320461 protocol: Methylation filtration (MF) - genotype: Mo17 maize inbred - rep3 GSE12770 Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes

Inter-species module comparison

A co-expression module including the Arabidopsis gene, At3g07750, orthologous to the query gene, Zm.9237.1.A1_at

VF %ile Gene ID Repr. ID Gene Name Func. O.I. H.G. S.X. Other DB
0.40 50.8 At3g07750 819966 3' exoribonuclease family domain 1-containing protein F:3'-5'-exoribonuclease activity, RNA binding;P:RNA processing;C:cellular_component unknown;MOFAPB O.I. H.G. S.X.
0.38 46.7 At5g57280 835833 methyltransferase F:methyltransferase activity;P:metabolic process;C:unknown;BOMFPA O.I. H.G. S.X.
0.35 41.6 At2g34260 817987 transducin family protein / WD-40 repeat family protein F:nucleotide binding;P:unknown;C:CUL4 RING ubiquitin ligase complex, heterotrimeric G-protein complex;MBFOPA O.I. H.G. S.X.
0.27 26.2 At1g60850 842377 ATRPAC42 F:DNA-directed RNA polymerase activity, protein dimerization activity, DNA binding;P:transcription;C:nucleolus;OMFAP O.I. H.G. S.X.
0.22 17.5 At3g23620 821942 brix domain-containing protein F:molecular_function unknown;P:biological_process unknown;C:nucleolus;MFOP O.I. H.G. S.X.

Select a plant to compare co-expressed genes between species.
Glycine_max
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera

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