Co-expression analysis

Gene ID	Zm.921.1.A1_at
Gene name
Homology with Arabidopsis	Similar to At5g10060: - (HF=9e+0)
Module size	10 genes
NF	0.68
%ile	90.0

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.90	97.0	0.92	Zm.921.1.A1_at	BF729210	-	-	9e+0	At5g10060	-	O.I.	H.G.	S.X.	Please select
0.86	96.3	0.93	Zm.2385.1.S1_a_at	AF531431.1	DNA-binding protein	-	8e-10	At1g20693	HMGB2 (HIGH MOBILITY GROUP B 2)	O.I.	H.G.	S.X.	Please select
0.78	92.5	0.93	Zm.7637.1.A1_a_at	BM079276	-	-	4e-1	At1g32570	unknown protein	O.I.	H.G.	S.X.	Please select
0.69	86.5	0.93	Zm.1868.1.A1_at	CO532345	hypothetical protein LOC100277410	-	5e+0	At1g19240	unknown protein	O.I.	H.G.	S.X.	Please select
0.67	85.8	0.97	Zm.11685.1.A1_at	BM379931	hypothetical protein LOC100194378	-	3e-1	At1g72645	unknown protein	O.I.	H.G.	S.X.	Please select
0.61	79.5	0.94	Zm.5314.1.A1_at	CF637974	transcription initiation factor IIF, alpha subunit	-	4e-11	At4g12610	transcription initiation factor IIF alpha subunit (TFIIF-alpha) family protein	O.I.	H.G.	S.X.	Please select
0.56	74.4	0.92	Zm.15170.1.A1_at	BM074838	hypothetical protein LOC100272682	-	1e+0	At1g17350	auxin-induced-related / indole-3-acetic acid induced-related	O.I.	H.G.	S.X.	Please select
0.50	65.7	0.97	ZmAffx.135.1.A1_at	AI667706	purine permease	-	3e+0	At2g43540	unknown protein	O.I.	H.G.	S.X.	Please select
0.48	61.3	0.95	Zm.19149.1.S1_at	CO526376	hypothetical protein LOC100272365	-	2e-1	At3g44020	thylakoid lumenal P17.1 protein	O.I.	H.G.	S.X.	Please select
0.40	48.5	0.98	Zm.11811.1.S1_at	CF052353	glycosyltransferase 5 /// glycosyltransferase 5	-	3e-10	At3g62720	XT1 (XYLOSYLTRANSFERASE 1)	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
14.2	98.8	GSM320455	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
13.9	98.8	GSM320453	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
10.4	98.4	GSM320454	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
9.9	98.3	GSM320452	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
9.7	98.3	GSM320447	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
9.1	98.2	GSM320448	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
8.9	98.2	GSM320450	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
8.9	98.2	GSM320449	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
8.2	98.0	GSM320451	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
2.6	92.9	GSM320471	protocol: Amplified fragment restriction polymorphism (AFLP) - genotype: CML69 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Vitis_vinifera

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