Co-expression analysis

Gene ID	Zm.9117.1.A1_at
Gene name	hypothetical protein LOC100274722
Homology with Arabidopsis	Similar to At1g71865: unknown protein (HF=4e-1)
Module size	14 genes
NF	0.48
%ile	60.6

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.62	79.8	0.97	Zm.9117.1.A1_at	CF636944	hypothetical protein LOC100274722	-	4e-1	At1g71865	unknown protein	O.I.	H.G.	S.X.	Please select
0.56	74.4	0.98	Zm.10148.1.A1_at	BM382070	-	-	3e-1	At4g18620	-	O.I.	H.G.	S.X.	Please select
0.55	71.6	0.98	Zm.9335.1.A1_at	BM268136	hypothetical protein LOC100273605	-	2e-2	At2g40580	protein kinase family protein	O.I.	H.G.	S.X.	Please select
0.54	69.8	0.98	ZmAffx.188.1.S1_at	AI668391	Hypothetical protein LOC100216777	-	3e-6	At1g13690	ATE1	O.I.	H.G.	S.X.	Please select
0.54	69.8	0.98	ZmAffx.1199.1.S1_at	BE057023	-	-	5e-2	At3g48610	phosphoesterase family protein	O.I.	H.G.	S.X.	Please select
0.54	69.8	0.99	ZmAffx.932.1.A1_at	AI795506	-	-	3e+0	At5g22430	unknown protein	O.I.	H.G.	S.X.	Please select
0.52	67.3	0.98	Zm.10557.1.A1_a_at	CK347884	hypothetical protein LOC100280344 /// agmatine deiminase	-	6e-6	At5g08170	EMB1873 (EMBRYO DEFECTIVE 1873)	O.I.	H.G.	S.X.	Please select
0.52	67.3	0.99	Zm.6751.1.A1_at	BG873976	hypothetical protein LOC100274772	-	4e-5	At3g62580	-	O.I.	H.G.	S.X.	Please select
0.50	65.7	0.98	Zm.14497.11.S1_at	BQ619270	-	-	3e-8	At5g59910	HTB4	O.I.	H.G.	S.X.	Please select
0.42	51.3	0.98	Zm.13846.1.S1_at	AY103949.1	-	-	6e-1	At5g07600	oleosin / glycine-rich protein	O.I.	H.G.	S.X.	Please select
0.40	48.5	0.98	Zm.9781.1.S1_at	AI621430	-	-	4e-1	At5g49570	AtPNG1 (Arabidopsis thaliana peptide-N-glycanase 1)	O.I.	H.G.	S.X.	Please select
0.35	38.9	0.98	Zm.17775.1.S1_at	CF627602	50S ribosomal protein L12-2	-	5e+0	At4g14358	-	O.I.	H.G.	S.X.	Please select
0.32	33.4	0.98	Zm.4022.2.A1_at	AY109470.1	glyoxysomal fatty acid beta-oxidation multifunctional protein MFP-a	-	2e+0	At3g06860	MFP2 (MULTIFUNCTIONAL PROTEIN 2)	O.I.	H.G.	S.X.	Please select
0.31	31.6	0.98	ZmAffx.1126.1.A1_at	AW313158	-	-	3e+0	At2g28605	-	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
6.1	97.4	GSM320447	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
6.1	97.4	GSM320455	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
4.2	96.0	GSM320454	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
4.1	95.9	GSM320451	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
3.9	95.7	GSM385709	Deep-sowing 10d treatment TIBA, biological rep1	GSE15371	Auxin-induced gene expression in mesocotyl elongation of maize inbred line 3681-4 tolerant to deep-sowing
3.9	95.7	GSM320453	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
3.7	95.4	GSM320448	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
3.4	94.9	GSM290553	WS1 with array type maize from Affymetrix	GSE11531	Downregulation of cinnamoyl-coenzyme A reductase in maize (affy_ccr_maize)
3.3	94.7	GSM320450	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
3.3	94.7	GSM320443	protocol: mRNA - genotype: Mo17 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Vitis_vinifera

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