Co-expression analysis

Gene ID	Zm.9036.1.A1_at
Gene name
Homology with Arabidopsis	Similar to At5g62850: AtVEX1 (VEGETATIVE CELL EXPRESSED1) (HF=4e-2)
Module size	22 genes
NF	0.37
%ile	39.4

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.71	88.2	0.95	Zm.9036.1.A1_at	BM339228	-	-	4e-2	At5g62850	AtVEX1 (VEGETATIVE CELL EXPRESSED1)	O.I.	H.G.	S.X.	Please select
0.54	69.8	0.97	Zm.15655.1.A1_at	CF627617	hypothetical protein LOC100279251	-	9e-12	At1g65950	ABC1 family protein	O.I.	H.G.	S.X.	Please select
0.50	65.7	0.97	Zm.10482.1.S1_at	AW330949	hypothetical protein LOC100280002	-	9e-1	At1g04680	pectate lyase family protein	O.I.	H.G.	S.X.	Please select
0.49	61.9	0.97	Zm.6569.2.S1_a_at	AY107413.1	hypothetical protein LOC100276303	-	1e+0	At3g59900	ARGOS (AUXIN-REGULATED GENE INVOLVED IN ORGAN SIZE)	O.I.	H.G.	S.X.	Please select
0.49	61.9	0.96	Zm.1373.1.A1_at	CF623658	wound/stress protein	-	9e+0	At5g37800	basic helix-loop-helix (bHLH) family protein	O.I.	H.G.	S.X.	Please select
0.47	59.9	0.96	Zm.124.1.S1_at	CF058601	dof zinc finger protein MNB1A	-	7e-7	At3g52440	Dof-type zinc finger domain-containing protein	O.I.	H.G.	S.X.	Please select
0.46	58.4	0.97	Zm.1386.1.S1_at	CF623901	hypothetical protein LOC100191903	-	2e-10	At1g43640	AtTLP5 (TUBBY LIKE PROTEIN 5)	O.I.	H.G.	S.X.	Please select
0.43	52.8	0.97	Zm.8336.1.S1_x_at	AB061270.1	NAS1 protein	-	4e+0	At2g44360	unknown protein	O.I.	H.G.	S.X.	Please select
0.42	51.3	0.96	Zm.17737.1.S1_at	CK370687	-	-	6e-3	At5g28560	unknown protein	O.I.	H.G.	S.X.	Please select
0.41	49.7	0.97	Zm.14951.1.A1_at	M36914.1	cell wall protein (put.); putative	-	5e-3	At2g30370	allergen-related	O.I.	H.G.	S.X.	Please select
0.35	38.9	0.96	Zm.6564.1.A1_at	AW231699	hypothetical protein LOC100272535	-	2e+0	At4g34850	chalcone and stilbene synthase family protein	O.I.	H.G.	S.X.	Please select
0.34	37.2	0.97	Zm.4157.1.A1_at	AY106551.1	-	-	3e-1	At2g47950	unknown protein	O.I.	H.G.	S.X.	Please select
0.32	33.4	0.97	Zm.4044.1.A1_at	AY109936.1	hypothetical protein LOC100273897 /// hypothetical protein LOC100274738	-	5e+0	At5g13780	GCN5-related N-acetyltransferase, putative	O.I.	H.G.	S.X.	Please select
0.31	31.6	0.97	Zm.11255.1.S1_at	AY107659.1	hypothetical protein LOC100217136	-	3e-32	At5g40200	DegP9 (DegP protease 9)	O.I.	H.G.	S.X.	Please select
0.31	31.6	0.97	Zm.18528.1.A1_at	CF630784	-	-	3e+0	At2g14095	unknown protein	O.I.	H.G.	S.X.	Please select
0.31	31.6	0.97	Zm.16306.1.A1_at	AY111557.1	hypothetical protein LOC100273693	-	2e+0	At1g07140	SIRANBP	O.I.	H.G.	S.X.	Please select
0.31	31.6	0.98	Zm.16904.2.A1_at	BM381185	-	-	6e+0	At5g57565	protein kinase family protein	O.I.	H.G.	S.X.	Please select
0.29	28.1	0.97	Zm.3204.1.S1_x_at	BM953397	hypothetical protein LOC100278241	-	3e-1	At1g70250	receptor serine/threonine kinase, putative	O.I.	H.G.	S.X.	Please select
0.27	24.6	0.97	Zm.520.1.S1_x_at	AF200528.1	cellulose synthase-4	-	2e-74	At5g05170	CEV1 (CONSTITUTIVE EXPRESSION OF VSP 1)	O.I.	H.G.	S.X.	Please select
0.25	21.3	0.96	Zm.16572.1.A1_at	CF650018	-	-	5e+0	At2g27228	CPuORF6 (Conserved peptide upstream open reading frame 6)	O.I.	H.G.	S.X.	Please select
0.25	21.3	0.97	Zm.2321.6.A1_at	AI677502	hypothetical protein LOC100277354	-	3e-3	At3g28970	AAR3 (antiauxin-resistant 3)	O.I.	H.G.	S.X.	Please select
0.17	10.6	0.97	Zm.14877.1.S1_at	CB179260	-	-	1e+0	At1g59700	ATGSTU16 (GLUTATHIONE S-TRANSFERASE TAU 16)	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
12.6	98.7	GSM320453	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
12.5	98.7	GSM320447	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
11.8	98.6	GSM253254	ZM_24h_SG200_3inf_II	GSE10023	Maize gene expression during infection with Ustilago maydis
11.2	98.5	GSM320455	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
10.6	98.4	GSM320454	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
10.3	98.4	GSM320448	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
9.2	98.2	GSM320450	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
8.9	98.2	GSM320449	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
8.3	98.0	GSM320451	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
7.8	97.9	GSM320452	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Vitis_vinifera

Back to the CoP portal site

Back to the KAGIANA project homepage