Co-expression analysis

Gene ID Zm.9034.1.A1_at
Gene name Bowman-Birk type trypsin inhibitor
Homology with ArabidopsisSimilar to At5g54745: DegP protease family (HF=5e+0)
Module size 26 genes
NF 0.38
%ile 41.2

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.8595.90.92Zm.9034.1.A1_atBM382058Bowman-Birk type trypsin inhibitor-5e+0At5g54745DegP protease familyO.I.H.G.S.X.
0.5065.70.93Zm.16367.2.S1_atCF348974--9e+0At4g05494unknown proteinO.I.H.G.S.X.
0.4961.90.96Zm.3892.7.A1_a_atCA399211Elongation factor 1 alpha-4e-128At1g07920elongation factor 1-alpha / EF-1-alphaO.I.H.G.S.X.
0.4961.90.96Zm.4562.1.A1_atBM332111--3e-1At4g16330oxidoreductase/ oxidoreductase, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donorsO.I.H.G.S.X.
0.4861.30.94Zm.2368.1.A1_atAY109497.1--4e-21At4g32390phosphate translocator-relatedO.I.H.G.S.X.
0.4556.40.95Zm.13639.1.S1_atAF372988.1legumin-like protein-5e-2At2g28680cupin family proteinO.I.H.G.S.X.
0.4149.70.93Zm.5038.2.A1_atAY112323.1ras-related protein RGP2-1e+0At4g19630heat shock factor protein-related / heat shock transcription factor-relatedO.I.H.G.S.X.
0.4048.50.95Zm.10730.2.S1_atCB334517hypothetical protein LOC100276488-1e-1At1g67660DNA binding / nucleaseO.I.H.G.S.X.
0.4048.50.96Zm.1566.1.A1_atCF031520--8e-1At1g75220integral membrane protein, putativeO.I.H.G.S.X.
0.3945.60.96Zm.13226.1.A1_atCF022192hydrogen-transporting ATP synthase, rotational mechanism-1e-1At4g29480mitochondrial ATP synthase g subunit family proteinO.I.H.G.S.X.
0.3945.60.94Zm.13884.2.S1_x_atAF099414.1R2R3MYB-domain protein /// R2R3MYB-domain protein-4e-6At4g38620MYB4O.I.H.G.S.X.
0.3945.60.95Zm.4187.1.S1_atAY105088.1--5e-1At5g45350proline-rich family proteinO.I.H.G.S.X.
0.3844.20.96Zm.8100.1.A1_atAY107723.1hypothetical protein LOC100192082-4e-2At3g61110ARS27A (ARABIDOPSIS RIBOSOMAL PROTEIN S27)O.I.H.G.S.X.
0.3742.30.94Zm.875.1.A1_atAY106374.1--4e-4At3g14860NHL repeat-containing proteinO.I.H.G.S.X.
0.3742.30.95ZmAffx.577.1.S1_atAI714809--2e+0At1g80745unknown proteinO.I.H.G.S.X.
0.3641.30.93Zm.5071.1.A1_atAI600710hypothetical protein LOC100193886-5e+0At5g50880unknown proteinO.I.H.G.S.X.
0.3641.30.95Zm.2288.1.S1_atCB329565hypothetical protein LOC100272544-7e-1At2g34750RNA polymerase I specific transcription initiation factor RRN3 family proteinO.I.H.G.S.X.
0.3538.90.95Zm.5752.1.S1_atAI649425hypothetical protein LOC100272294-2e+0At1g48150MADS-box protein (AGL74 )O.I.H.G.S.X.
0.3538.90.96Zm.18462.1.S1_atCO517427--1e+0At4g09550unknown proteinO.I.H.G.S.X.
0.3233.40.95Zm.2538.1.A1_atBM336091hypothetical protein LOC100278766-4e+0At4g01935unknown proteinO.I.H.G.S.X.
0.3233.40.95Zm.6481.1.A1_atAI692068--7e-2At4g16830nuclear RNA-binding protein (RGGA)O.I.H.G.S.X.
0.2724.60.97Zm.18349.1.A1_atCO532803--9e+0At4g11350transferase, transferring glycosyl groupsO.I.H.G.S.X.
0.2521.30.96Zm.17969.1.A1_atCK827261--5e+0At4g38360unknown proteinO.I.H.G.S.X.
0.2419.80.96Zm.13621.1.A1_atCF632782hypothetical protein LOC100191615-4e-10At2g17350unknown proteinO.I.H.G.S.X.
0.2216.90.96Zm.7569.1.A1_atBM347275--1e+0At1g69880ATH8 (thioredoxin H-type 8)O.I.H.G.S.X.
0.2115.50.95Zm.5420.1.A1_atAI491495--5e-19At1g74880NDH-O (NAD(P)H:plastoquinone dehydrogenase complex subunit O)O.I.H.G.S.X.

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Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
10.898.5GSM320451protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
9.898.3GSM320447protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
9.498.3GSM320448protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
9.298.2GSM320453protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
8.798.1GSM320449protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
8.698.1GSM320455protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
8.498.1GSM320452protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
7.697.9GSM320454protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
6.997.7GSM320450protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
3.394.7GSM206304Upper pulvinus 60 min polysomal RNA biorep 1GSE8320Transcriptional and translational gene regulation in the maize pulvinusLink to GEO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera



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