Co-expression analysis

Gene ID	Zm.9008.2.S1_at
Gene name
Homology with Arabidopsis	Similar to At3g27080: TOM20-3 (TRANSLOCASE OF OUTER MEMBRANE 20 KDA SUBUNIT 3) (HF=3e+0)
Module size	8 genes
NF	0.48
%ile	59.4

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.70	87.0	0.93	Zm.9008.2.S1_at	AI665626	-	-	3e+0	At3g27080	TOM20-3 (TRANSLOCASE OF OUTER MEMBRANE 20 KDA SUBUNIT 3)	O.I.	H.G.	S.X.	Please select
0.59	76.1	0.95	Zm.8739.1.A1_at	BM334364	-	-	8e-1	At3g50300	transferase family protein	O.I.	H.G.	S.X.	Please select
0.54	69.8	0.94	Zm.3245.1.A1_at	BG842781	hypothetical protein LOC100278628	-	2e-1	At3g46640	PCL1 (PHYTOCLOCK 1)	O.I.	H.G.	S.X.	Please select
0.53	69.1	0.94	Zm.6525.1.A1_at	AW065366	-	-	2e-1	At4g01703	unknown protein	O.I.	H.G.	S.X.	Please select
0.40	48.5	0.97	Zm.15800.5.A1_a_at	CA404204	-	-	1e-5	At4g13780	methionine--tRNA ligase, putative / methionyl-tRNA synthetase, putative / MetRS, putative	O.I.	H.G.	S.X.	Please select
0.33	36.0	0.96	Zm.13852.1.A1_at	AF351192.1	-	-	2e+1	At5g15970	KIN2	O.I.	H.G.	S.X.	Please select
0.32	33.4	0.94	Zm.5071.1.A1_at	AI600710	hypothetical protein LOC100193886	-	5e+0	At5g50880	unknown protein	O.I.	H.G.	S.X.	Please select
0.23	18.6	0.95	Zm.5438.1.A1_at	BQ619430	hypothetical protein LOC100272439	-	9e-3	At4g33580	carbonic anhydrase family protein / carbonate dehydratase family protein	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
24.8	99.6	GSM320453	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
23.3	99.5	GSM320455	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
19.6	99.3	GSM320454	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
15.8	99.0	GSM320447	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
15.4	99.0	GSM320448	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
14.8	98.9	GSM320449	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
10.9	98.5	GSM320451	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
10.7	98.5	GSM320452	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
7.7	97.9	GSM320450	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
3.0	94.0	GSM320457	protocol: Methylation filtration (MF) - genotype: B73 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Vitis_vinifera

Back to the CoP portal site

Back to the KAGIANA project homepage