Co-expression analysis

Gene ID Zm.8992.2.A1_a_at
Gene name hypothetical protein LOC100191900 /// glyceraldehyde-3-phosphate dehydrogenase, cytosolic
Homology with ArabidopsisSimilar to At1g79530: GAPCP-1 (GLYCERALDEHYDE-3-PHOSPHATE DEHYDROGENASE OF PLASTID 1) (HF=2e-25)
Module size 14 genes
NF 0.43
%ile 50.9

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.6986.50.96Zm.8992.2.A1_a_atAW066740hypothetical protein LOC100191900 /// glyceraldehyde-3-phosphate dehydrogenase, cytosolic-2e-25At1g79530GAPCP-1 (GLYCERALDEHYDE-3-PHOSPHATE DEHYDROGENASE OF PLASTID 1)O.I.H.G.S.X.
0.6785.80.97Zm.6045.2.A1_a_atBM337093guanine nucleotide-binding protein beta subunit-like protein-2e-10At1g18080ATARCAO.I.H.G.S.X.
0.5267.30.97Zm.3289.1.A1_atAI979535--2e+0At3g16240DELTA-TIPO.I.H.G.S.X.
0.4759.90.97Zm.749.1.S1_atAY291061.1photosystem II subunit PsbS1-8e-7At1g44575NPQ4 (NONPHOTOCHEMICAL QUENCHING)O.I.H.G.S.X.
0.4455.70.97Zm.6049.3.A1_a_atAI734480phosphatidylinositol transporter/ transporter-3e-3At1g76640calmodulin-related protein, putativeO.I.H.G.S.X.
0.4149.70.97Zm.6636.1.A1_atCF058269hypothetical LOC542699-9e-2At3g59280TXR1 (THAXTOMIN A RESISTANT 1)O.I.H.G.S.X.
0.4048.50.97Zm.17630.1.A1_atCK348094--4e-1At1g06760histone H1, putativeO.I.H.G.S.X.
0.3945.60.97Zm.13681.1.S1_atAY106895.1hypothetical protein LOC100191679-4e-10At1g12370PHR1 (PHOTOLYASE 1)O.I.H.G.S.X.
0.3742.30.97Zm.5960.1.A1_atAI665953hypothetical protein LOC100277799-1e+1At5g65158-O.I.H.G.S.X.
0.3641.30.97Zm.17497.1.A1_atBG266429hypothetical protein LOC100273930-3e+0Atmg00140-O.I.H.G.S.X.
0.3131.60.98Zm.8378.1.A1_atBM073885hypothetical protein LOC100273227-6e+0At3g26860-O.I.H.G.S.X.
0.3029.80.97Zm.4530.1.A1_atCK827450hypothetical protein LOC100276667-1e-1At5g33898unknown proteinO.I.H.G.S.X.
0.2928.10.97Zm.658.2.A1_atAY109666.1dihydroflavanoid reductase-like1-2e+0At5g26630MADS-box protein (AGL35)O.I.H.G.S.X.
0.2928.10.97Zm.4369.2.A1_x_atCF016250hypothetical protein LOC100276142-5e+0At2g37590Dof-type zinc finger domain-containing proteinO.I.H.G.S.X.

Click More genes



Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
4.296.0GSM206313Upper pulvinus 5 min total RNA biorep 2GSE8320Transcriptional and translational gene regulation in the maize pulvinusLink to GEO
4.195.9GSM320455protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
4.095.8GSM320451protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
3.995.7GSM320453protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
3.895.5GSM202319Mo17 19 day after pollination embryo tissue, biological replicate 3GSE8179Cis-transcriptional variation in maize inbred lines B73 and Mo17 leads to additive expression - Embryo dataLink to GEO
3.895.5GSM202309Mo17 19 day after pollination embryo tissue, biological replicate 1GSE8179Cis-transcriptional variation in maize inbred lines B73 and Mo17 leads to additive expression - Embryo dataLink to GEO
3.895.5GSM320454protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
3.494.9GSM202318B73xMo17 19 day after pollination embryo tissue, biological replicate 2GSE8179Cis-transcriptional variation in maize inbred lines B73 and Mo17 leads to additive expression - Embryo dataLink to GEO
3.494.9GSM202314Mo17 19 day after pollination embryo tissue, biological replicate 2GSE8179Cis-transcriptional variation in maize inbred lines B73 and Mo17 leads to additive expression - Embryo dataLink to GEO
3.494.9GSM202324Mo17xB73 19 day after pollination embryo tissue, biological replicate 3GSE8179Cis-transcriptional variation in maize inbred lines B73 and Mo17 leads to additive expression - Embryo dataLink to GEO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera



Back to the CoP portal site

Back to the KAGIANA project homepage