Co-expression analysis

Gene ID	Zm.8911.1.A1_at
Gene name
Homology with Arabidopsis	Similar to At5g23540: 26S proteasome regulatory subunit, putative (HF=4e-2)
Module size	6 genes
NF	0.47
%ile	59.0

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.56	74.4	0.98	Zm.8911.1.A1_at	BM350783	-	-	4e-2	At5g23540	26S proteasome regulatory subunit, putative	O.I.	H.G.	S.X.	Please select
0.80	94.0	0.98	Zm.9361.1.A1_at	BM349541	-	-	5e+0	At4g09580	-	O.I.	H.G.	S.X.	Please select
0.60	77.8	0.98	Zm.10375.1.S1_at	BQ703821	-	-	2e-17	At2g35360	ubiquitin family protein	O.I.	H.G.	S.X.	Please select
0.43	52.8	0.98	ZmAffx.1193.1.S1_at	BE025345	-	-	3e+0	At3g13140	hydroxyproline-rich glycoprotein family protein	O.I.	H.G.	S.X.	Please select
0.35	38.9	0.98	Zm.13252.1.S1_at	U50816.1	-	-	6e-1	At4g34730	ribosome-binding factor A family protein	O.I.	H.G.	S.X.	Please select
0.29	28.1	0.98	Zm.2269.1.S1_at	CF631922	-	-	1e-7	At5g51820	PGM (PHOSPHOGLUCOMUTASE)	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
7.8	97.9	GSM320450	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
7.6	97.9	GSM320451	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
7.6	97.9	GSM320449	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
7.5	97.8	GSM320455	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
7.5	97.8	GSM320453	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
6.9	97.7	GSM320452	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
6.8	97.6	GSM320448	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
6.1	97.4	GSM320447	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
5.6	97.1	GSM320454	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
2.0	90.2	GSM385709	Deep-sowing 10d treatment TIBA, biological rep1	GSE15371	Auxin-induced gene expression in mesocotyl elongation of maize inbred line 3681-4 tolerant to deep-sowing

Inter-species module comparison

A co-expression module including the grape gene, 1609978_at, orthologous to the query gene, Zm.8911.1.A1_at

VF	%ile	Gene ID	Repr. ID	Gene Name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.93	99.2	1609978_at	At5g23540	hypothetical protein LOC100247098	-	4e-143	At5g23540	26S proteasome regulatory subunit, putative	O.I.	H.G.	S.X.	Please select
0.47	67.7	1610761_at	At5g23540	hypothetical protein LOC100244127	-	6e-68	At2g26300	GP ALPHA 1 (G PROTEIN ALPHA SUBUNIT 1)	O.I.	H.G.	S.X.	Please select
0.46	66.5	1607405_at	At5g23540	hypothetical protein LOC100261003	-	2e-6	At1g72550	tRNA synthetase beta subunit family protein	O.I.	H.G.	S.X.	Please select
0.44	64.1	1611661_at	At5g23540	hypothetical protein LOC100245913	-	2e-5	At5g18900	oxidoreductase, 2OG-Fe(II) oxygenase family protein	O.I.	H.G.	S.X.	Please select
0.43	61.5	1611812_at	At5g23540	hypothetical protein LOC100263785	-	4e-73	At5g20920	EIF2 BETA	O.I.	H.G.	S.X.	Please select
0.39	54.9	1615406_at	At5g23540	hypothetical protein LOC100247342	-	2e-33	At5g05010	clathrin adaptor complexes medium subunit-related	O.I.	H.G.	S.X.	Please select
0.39	54.9	1620312_at	At5g23540	hypothetical protein LOC100254135	-	7e-56	At1g49040	SCD1 (STOMATAL CYTOKINESIS-DEFECTIVE 1)	O.I.	H.G.	S.X.	Please select
0.37	51.7	1615683_at	At5g23540	hypothetical protein LOC100265913	-	2e+0	At4g29220	PFK1 (PHOSPHOFRUCTOKINASE 1)	O.I.	H.G.	S.X.	Please select
0.36	50.7	1614840_at	At5g23540	hypothetical protein LOC100248036	-	2e-56	At1g10840	TIF3H1	O.I.	H.G.	S.X.	Please select
0.36	50.7	1616644_at	At5g23540	hypothetical protein LOC100250187	-	5e-34	At2g29080	ftsh3 (FtsH protease 3)	O.I.	H.G.	S.X.	Please select
0.35	48.5	1621810_at	At5g23540	hypothetical protein LOC100258904	-	4e+0	At4g33660	unknown protein	O.I.	H.G.	S.X.	Please select
0.35	48.5	1619101_at	At5g23540	hypothetical protein LOC100248761	-	4e-13	At1g04850	ubiquitin-associated (UBA)/TS-N domain-containing protein	O.I.	H.G.	S.X.	Please select
0.34	46.8	1614992_at	At5g23540	hypothetical protein LOC100263906	-	1e-18	At1g16740	ribosomal protein L20 family protein	O.I.	H.G.	S.X.	Please select
0.33	45.7	1608146_at	At5g23540	hypothetical protein LOC100253931	-	3e-14	At1g47420	-	O.I.	H.G.	S.X.	Please select
0.33	45.7	1614001_s_at	At5g23540	hypothetical protein LOC100260862	-	2e-41	At3g22290	unknown protein	O.I.	H.G.	S.X.	Please select
0.33	45.7	1615074_at	At5g23540	hypothetical protein LOC100254966	-	3e-35	At1g51710	UBP6 (UBIQUITIN-SPECIFIC PROTEASE 6)	O.I.	H.G.	S.X.	Please select
0.33	45.7	1607209_at	At5g23540	hypothetical protein LOC100252578	-	5e-29	At1g68370	ARG1 (ALTERED RESPONSE TO GRAVITY 1)	O.I.	H.G.	S.X.	Please select
0.32	43.1	1615735_at	At5g23540	hypothetical protein LOC100259271	-	0	At1g50370	serine/threonine protein phosphatase, putative	O.I.	H.G.	S.X.	Please select
0.32	43.1	1612790_at	At5g23540	hypothetical protein LOC100243027	-	1e-17	At1g61250	SC3 (SECRETORY CARRIER 3)	O.I.	H.G.	S.X.	Please select
0.31	41.3	1611560_at	At5g23540	hypothetical protein LOC100265794	-	8e-62	At4g38790	ER lumen protein retaining receptor family protein	O.I.	H.G.	S.X.	Please select
0.29	37.7	1615993_at	At5g23540	hypothetical protein LOC100263412	-	2e-10	At1g80410	EMB2753 (EMBRYO DEFECTIVE 2753)	O.I.	H.G.	S.X.	Please select
0.29	37.7	1611531_at	At5g23540	hypothetical protein LOC100245846	-	1e-29	At4g33410	signal peptide peptidase family protein	O.I.	H.G.	S.X.	Please select
0.28	37.7	1614734_s_at	At5g23540	hypothetical protein LOC100241422	-	4e-2	At5g13450	ATP synthase delta chain, mitochondrial, putative / H(+)-transporting two-sector ATPase, delta (OSCP) subunit, putative	O.I.	H.G.	S.X.	Please select
0.28	37.7	1612829_at	At5g23540	hypothetical protein LOC100247114	-	2e-93	At4g34720	AVA-P1	O.I.	H.G.	S.X.	Please select
0.28	37.7	1619398_at	At5g23540	hypothetical protein LOC100261913	-	4e-135	At3g08550	KOB1 (KOBITO)	O.I.	H.G.	S.X.	Please select
0.28	37.7	1620700_at	At5g23540	hypothetical protein LOC100261522	-	4e-20	At1g30230	elongation factor 1-beta / EF-1-beta	O.I.	H.G.	S.X.	Please select
0.25	30.5	1611412_at	At5g23540	hypothetical protein LOC100244694	-	2e+0	At5g37480	unknown protein	O.I.	H.G.	S.X.	Please select
0.23	27.5	1619414_at	At5g23540	hypothetical protein LOC100241708	-	1e-8	At4g23460	beta-adaptin, putative	O.I.	H.G.	S.X.	Please select
0.20	22.4	1606962_at	At5g23540	hypothetical protein LOC100244131	-	4e-13	At5g14240	-	O.I.	H.G.	S.X.	Please select

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

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