Co-expression analysis

Gene ID	Zm.8911.1.A1_at
Gene name
Homology with Arabidopsis	Similar to At5g23540: 26S proteasome regulatory subunit, putative (HF=4e-2)
Module size	6 genes
NF	0.47
%ile	59.0

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.56	74.4	0.98	Zm.8911.1.A1_at	BM350783	-	-	4e-2	At5g23540	26S proteasome regulatory subunit, putative	O.I.	H.G.	S.X.	Please select
0.80	94.0	0.98	Zm.9361.1.A1_at	BM349541	-	-	5e+0	At4g09580	-	O.I.	H.G.	S.X.	Please select
0.60	77.8	0.98	Zm.10375.1.S1_at	BQ703821	-	-	2e-17	At2g35360	ubiquitin family protein	O.I.	H.G.	S.X.	Please select
0.43	52.8	0.98	ZmAffx.1193.1.S1_at	BE025345	-	-	3e+0	At3g13140	hydroxyproline-rich glycoprotein family protein	O.I.	H.G.	S.X.	Please select
0.35	38.9	0.98	Zm.13252.1.S1_at	U50816.1	-	-	6e-1	At4g34730	ribosome-binding factor A family protein	O.I.	H.G.	S.X.	Please select
0.29	28.1	0.98	Zm.2269.1.S1_at	CF631922	-	-	1e-7	At5g51820	PGM (PHOSPHOGLUCOMUTASE)	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
7.8	97.9	GSM320450	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
7.6	97.9	GSM320451	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
7.6	97.9	GSM320449	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
7.5	97.8	GSM320455	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
7.5	97.8	GSM320453	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
6.9	97.7	GSM320452	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
6.8	97.6	GSM320448	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
6.1	97.4	GSM320447	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
5.6	97.1	GSM320454	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
2.0	90.2	GSM385709	Deep-sowing 10d treatment TIBA, biological rep1	GSE15371	Auxin-induced gene expression in mesocotyl elongation of maize inbred line 3681-4 tolerant to deep-sowing

Inter-species module comparison

A co-expression module including the soybean gene, GmaAffx.14509.1.S1_at, orthologous to the query gene, Zm.8911.1.A1_at

VF	%ile	Gene ID	Repr. ID	Gene Name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.72	88.1	GmaAffx.14509.1.S1_at	At5g23540	-	-	3e+0	At3g16360	AHP4 (HPT PHOSPHOTRANSMITTER 4)	O.I.	H.G.	S.X.	Please select
0.74	89.2	Gma.11054.1.A1_s_at	At5g23540	-	-	2e-1	At1g64470	ubiquitin family protein	O.I.	H.G.	S.X.	Please select
0.63	82.9	GmaAffx.82924.1.S1_at	At5g23540	-	-	4e-40	At5g47790	forkhead-associated domain-containing protein / FHA domain-containing protein	O.I.	H.G.	S.X.	Please select
0.63	82.9	GmaAffx.60156.1.S1_s_at	At5g23540	-	-	2e+0	At5g58580	ATL63 (ARABIDOPSIS TÓ	O.I.	H.G.	S.X.	Please select
0.58	78.8	Gma.1973.2.A1_at	At5g23540	-	-	7e-1	At4g25560	AtMYB18 (myb domain protein 18)	O.I.	H.G.	S.X.	Please select
0.58	78.8	Gma.5847.2.A1_at	At5g23540	-	-	3e+0	At3g06460	GNS1/SUR4 membrane family protein	O.I.	H.G.	S.X.	Please select
0.55	76.3	Gma.10823.1.S1_a_at	At5g23540	-	-	3e-32	At1g65220	eIF4-gamma/eIF5/eIF2-epsilon domain-containing protein	O.I.	H.G.	S.X.	Please select
0.55	76.3	Gma.17692.1.S1_at	At5g23540	-	-	1e-13	At3g54560	HTA11	O.I.	H.G.	S.X.	Please select
0.53	74.2	GmaAffx.52334.1.S1_at	At5g23540	-	-	8e-1	At4g34360	protease-related	O.I.	H.G.	S.X.	Please select
0.52	73.1	GmaAffx.19793.1.S1_at	At5g23540	FIE	-	8e-43	At3g20740	FIE (FERTILIZATION-INDEPENDENT ENDOSPERM)	O.I.	H.G.	S.X.	Please select
0.48	67.7	Gma.1115.1.S1_at	At5g23540	-	-	1e-22	At5g64270	splicing factor, putative	O.I.	H.G.	S.X.	Please select
0.47	66.6	Gma.7218.1.S1_at	At5g23540	-	-	6e-23	At1g67325	binding / zinc ion binding	O.I.	H.G.	S.X.	Please select
0.47	66.6	Gma.4398.1.A1_at	At5g23540	-	-	4e-1	At2g27010	CYP705A9	O.I.	H.G.	S.X.	Please select
0.46	65.5	Gma.17283.1.A1_at	At5g23540	-	-	5e+0	At5g44120	CRA1 (CRUCIFERINA)	O.I.	H.G.	S.X.	Please select
0.44	63.3	GmaAffx.80234.1.S1_s_at	At5g23540	-	-	9e+0	At5g46980	invertase/pectin methylesterase inhibitor family protein	O.I.	H.G.	S.X.	Please select
0.38	53.3	Gma.15004.1.S1_at	At5g23540	-	-	2e-9	At4g21110	G10 family protein	O.I.	H.G.	S.X.	Please select
0.37	51.7	GmaAffx.68762.1.A1_s_at	At5g23540	-	-	3e-6	At4g32930	unknown protein	O.I.	H.G.	S.X.	Please select
0.36	50.8	Gma.10855.1.S1_a_at	At5g23540	-	-	1e-129	At4g00660	DEAD/DEAH box helicase, putative	O.I.	H.G.	S.X.	Please select
0.32	43.7	Gma.10328.1.S1_x_at	At5g23540	-	-	3e+0	At3g63190	RRF (RIBOSOME RECYCLING FACTOR, CHLOROPLAST PRECURSOR)	O.I.	H.G.	S.X.	Please select

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Vitis_vinifera

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