Co-expression analysis

Gene ID Zm.8868.1.A1_at
Gene name hypothetical protein LOC100275200
Homology with ArabidopsisSimilar to At3g05000: transport protein particle (TRAPP) component Bet3 family protein (HF=2e+0)
Module size 26 genes
NF 0.56
%ile 73.8

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.7992.80.98Zm.8868.1.A1_atBM335939hypothetical protein LOC100275200-2e+0At3g05000transport protein particle (TRAPP) component Bet3 family proteinO.I.H.G.S.X.
0.8294.60.99Zm.18971.1.A1_atCO534149--3e-8At2g25870haloacid dehalogenase-like hydrolase family proteinO.I.H.G.S.X.
0.7992.80.99ZmAffx.954.1.S1_atAI833471--3e+0At1g26480GRF12 (GENERAL REGULATORY FACTOR 12)O.I.H.G.S.X.
0.7087.00.99ZmAffx.1283.1.S1_at40794996-131--9e-1At1g32470glycine cleavage system H protein, mitochondrial, putativeO.I.H.G.S.X.
0.6785.80.98ZmAffx.1075.1.A1_atAI947879--1e+1At5g10130pollen Ole e 1 allergen and extensin family proteinO.I.H.G.S.X.
0.6682.30.98Zm.15979.1.A1_atAW091403hypothetical protein LOC100277589-8e-2At3g10750-O.I.H.G.S.X.
0.6381.10.98ZmAffx.929.1.S1_atAI795460--5e-2At5g17900-O.I.H.G.S.X.
0.6279.80.98Zm.2008.1.A1_atCF623731hypothetical protein LOC100279662-8e-8At3g02990ATHSFA1EO.I.H.G.S.X.
0.6279.80.98Zm.4716.1.A1_atAI738149hypothetical protein LOC100193057-1e-1At4g37750ANT (AINTEGUMENTA)O.I.H.G.S.X.
0.6077.80.98Zm.5578.4.S1_atAI677290Hypothetical protein LOC100193656-4e+0At1g34910unknown proteinO.I.H.G.S.X.
0.5875.10.98Zm.12454.1.A1_atCF629114hypothetical protein LOC100273736-6e-3At1g10640polygalacturonaseO.I.H.G.S.X.
0.5775.10.99Zm.3865.2.A1_atCF625226--5e-54At4g16155dihydrolipoyl dehydrogenaseO.I.H.G.S.X.
0.5674.40.98Zm.6767.1.S1_atAY104126.1hypothetical protein LOC100216595-3e-28At1g52930brix domain-containing proteinO.I.H.G.S.X.
0.5166.40.99Zm.12526.1.A1_x_atAI734393--3e+0At1g58150unknown proteinO.I.H.G.S.X.
0.5065.70.99Zm.6214.1.A1_a_atBQ538548hypothetical protein LOC100273730 /// ORMDL family protein-9e-12At5g42000ORMDL family proteinO.I.H.G.S.X.
0.4961.90.98Zm.9948.1.A1_atCB3507883-N-debenzoyl-2-deoxytaxol N-benzoyltransferase-2e+0At1g54575unknown proteinO.I.H.G.S.X.
0.4861.30.98Zm.7791.1.A1_atBM382756hypothetical protein LOC100191966-3e-8At4g15960catalytic/ epoxide hydrolaseO.I.H.G.S.X.
0.4658.40.99Zm.1690.1.A1_atCK347441density-regulated protein-4e-17At5g11900eukaryotic translation initiation factor SUI1 family proteinO.I.H.G.S.X.
0.4556.40.99Zm.13979.1.S1_atAY106073.1hypothetical protein LOC100273275-8e-22At2g20130LCV1 (LIKE COV 1)O.I.H.G.S.X.
0.4455.70.99Zm.16469.1.S1_atCF650934--3e-4At3g15352ATCOX17O.I.H.G.S.X.
0.4149.70.98Zm.10540.2.A1_a_atBQ538200branched-chain-amino-acid aminotransferase-1e+0At5g65780ATBCAT-5O.I.H.G.S.X.
0.3945.60.99Zm.9952.1.A1_atBM349898--6e+0At5g46115unknown proteinO.I.H.G.S.X.
0.3945.60.99Zm.3124.1.S1_atAY109771.1CONSTANS interacting protein 4-1e+1At5g37770TCH2 (TOUCH 2)O.I.H.G.S.X.
0.3844.20.99Zm.15.1.A1_atAY271262.1NADP malic enzyme3-3e-16At1g79750ATNADP-ME4 (NADP-malic enzyme 4)O.I.H.G.S.X.
0.3538.90.99ZmAffx.848.1.A1_atAI770631--8e-1At1g22720wall-associated kinase, putativeO.I.H.G.S.X.
0.3336.00.99Zm.8805.1.A1_atBM337840--6e+0At5g1620050S ribosomal protein-relatedO.I.H.G.S.X.

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Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
19.899.3GSM320455protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
19.399.3GSM320453protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
15.499.0GSM320454protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
14.198.8GSM320450protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
13.498.8GSM320452protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
12.098.6GSM320449protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
11.898.6GSM320451protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
11.598.6GSM320448protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
11.298.5GSM320447protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
2.893.5GSM320464protocol: Methylation filtration (MF) - genotype: CML69 maize inbred - rep3GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera



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