CoP: Co-expressed Biological Processes

Co-expression analysis

Gene ID Zm.8865.1.A1_at

Gene name hypothetical protein LOC100191271
Homology with Arabidopsis Similar to At5g35460: unknown protein (HF=3e-9)

Module size 6 genes

NF 0.59

%ile 78.7

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func. Ev AGI code Arabidopsis gene name O.I. H.G. S.X. Other DB
0.57 75.1 0.97 Zm.8865.1.A1_at BM267927 hypothetical protein LOC100191271 - 3e-9 At5g35460 unknown protein O.I. H.G. S.X.
0.83 95.6 0.97 Zm.17628.1.S1_at CN845468 - - 6e-17 At2g34560 katanin, putative O.I. H.G. S.X.
0.71 88.2 0.97 Zm.17366.1.S1_s_at CK371241 - - 1e+1 At5g20060 phospholipase/carboxylesterase family protein O.I. H.G. S.X.
0.61 79.5 0.97 Zm.15542.1.S1_at CD219383 - - 2e-2 At4g29080 PAP2 (PHYTOCHROME-ASSOCIATED PROTEIN 2) O.I. H.G. S.X.
0.56 74.4 0.97 Zm.38.1.S1_at M60215.1 ser/thr protein phosphatase1 - 1e-12 At2g29400 TOPP1 (TYPE ONE PROTEIN PHOSPHATASE 1) O.I. H.G. S.X.
0.33 36.0 0.97 Zm.6863.2.A1_at CF637783 hypothetical protein LOC100193970 - 7e-67 At1g48410 AGO1 (ARGONAUTE 1) O.I. H.G. S.X.

Click More genes

Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
4.9 96.7 GSM320449 protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3 GSE12770 Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
4.8 96.6 GSM320452 protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3 GSE12770 Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
4.7 96.5 GSM320450 protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1 GSE12770 Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
4.5 96.3 GSM320455 protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3 GSE12770 Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
4.4 96.2 GSM320454 protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2 GSE12770 Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
4.3 96.1 GSM320453 protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1 GSE12770 Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
3.9 95.7 GSM320451 protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2 GSE12770 Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
3.9 95.7 GSM320448 protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2 GSE12770 Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
3.4 94.9 GSM320447 protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1 GSE12770 Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
3.3 94.7 GSM323170 Zm_SG200Dpep1_24hpi_I GSE12892 Maize gene expression during infection with Ustilago maydis strain SG200Dpep1

Inter-species module comparison

A co-expression module including the Arabidopsis gene, At5g35460, orthologous to the query gene, Zm.8865.1.A1_at

VF %ile Gene ID Repr. ID Gene Name Func. O.I. H.G. S.X. Other DB
1.00 100.0 At5g35460 833509 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;FOPM O.I. H.G. S.X.
0.31 33.8 At1g71190 843459 SAG18 (SENESCENCE ASSOCIATED GENE 18) Senescence associated gene (SAG). Expression induced by ozone. Encodes a plant-specific protein of unknown function. Based on a personal communication from David Meinke (08/21/2007), this gene is not allelic to TTN4, even though this has been stated previously in a publication. O.I. H.G. S.X.
0.29 30.3 At4g11220 826724 BTI2 (VIRB2-INTERACTING PROTEIN 2) F:unknown;P:biological_process unknown;C:endoplasmic reticulum, plasma membrane;MPOF O.I. H.G. S.X.
0.25 22.6 At3g51520 824315 diacylglycerol acyltransferase family F:diacylglycerol O-acyltransferase activity, transferase activity, transferring acyl groups other than amino-acyl groups;P:biological_process unknown;C:cellular_component unknown;MBFOP O.I. H.G. S.X.
0.23 19.3 At1g16180 838187 TMS membrane family protein / tumour differentially expressed (TDE) family protein F:molecular_function unknown;P:unknown;C:endomembrane system, membrane;MFPO O.I. H.G. S.X.
0.15 7.8 At5g27840 832846 TOPP8 encodes a serine/threonine protein phosphatase expressed in expressed in roots, rosettes and flowers. O.I. H.G. S.X.
0.14 6.8 At1g09920 837524 TRAF-type zinc finger-related F:zinc ion binding;P:biological_process unknown;C:cellular_component unknown;MOFP O.I. H.G. S.X.
0.14 6.8 At1g11910 837740 aspartyl protease family protein F:aspartic-type endopeptidase activity;P:proteolysis, response to salt stress;C:vacuole;MFOPB O.I. H.G. S.X.
0.11 4.1 At1g21760 838780 FBP7 (F-BOX PROTEIN 7) This gene is predicted to encode an F-box protein that is evolutionarily conserved between Arabidopsis and other eukaryotes including S.cerevisiae and humans. It may play a role in regulating translation under conditions of temperature stress. FBP7 transcript levels are increased at high and low temperatures. O.I. H.G. S.X.
0.11 4.1 At3g04090 819564 SIP1A (SMALL AND BASIC INTRINSIC PROTEIN 1A) Belongs to a family of plant aquaporins. Similar to yeast and radish aquaporins. Located on ER. O.I. H.G. S.X.
0.11 4.1 At4g23630 828463 BTI1 (VIRB2-INTERACTING PROTEIN 1) F:unknown;P:biological_process unknown;C:endoplasmic reticulum, plasma membrane, vacuole;MPOF O.I. H.G. S.X.

Select a plant to compare co-expressed genes between species.
Glycine_max
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera

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