Co-expression analysis

Gene ID Zm.8865.1.A1_at
Gene name hypothetical protein LOC100191271
Homology with ArabidopsisSimilar to At5g35460: unknown protein (HF=3e-9)
Module size 6 genes
NF 0.59
%ile 78.7

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.5775.10.97Zm.8865.1.A1_atBM267927hypothetical protein LOC100191271-3e-9At5g35460unknown proteinO.I.H.G.S.X.
0.8395.60.97Zm.17628.1.S1_atCN845468--6e-17At2g34560katanin, putativeO.I.H.G.S.X.
0.7188.20.97Zm.17366.1.S1_s_atCK371241--1e+1At5g20060phospholipase/carboxylesterase family proteinO.I.H.G.S.X.
0.6179.50.97Zm.15542.1.S1_atCD219383--2e-2At4g29080PAP2 (PHYTOCHROME-ASSOCIATED PROTEIN 2)O.I.H.G.S.X.
0.5674.40.97Zm.38.1.S1_atM60215.1ser/thr protein phosphatase1-1e-12At2g29400TOPP1 (TYPE ONE PROTEIN PHOSPHATASE 1)O.I.H.G.S.X.
0.3336.00.97Zm.6863.2.A1_atCF637783hypothetical protein LOC100193970-7e-67At1g48410AGO1 (ARGONAUTE 1)O.I.H.G.S.X.

Click More genes



Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
4.996.7GSM320449protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
4.896.6GSM320452protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
4.796.5GSM320450protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
4.596.3GSM320455protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
4.496.2GSM320454protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
4.396.1GSM320453protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
3.995.7GSM320451protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
3.995.7GSM320448protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
3.494.9GSM320447protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
3.394.7GSM323170Zm_SG200Dpep1_24hpi_IGSE12892Maize gene expression during infection with Ustilago maydis strain SG200Dpep1Link to GEO

Inter-species module comparison

A co-expression module including the Arabidopsis gene, At5g35460, orthologous to the query gene, Zm.8865.1.A1_at

VF%ileGene IDRepr. IDGene NameFunc.O.I.H.G.S.X.Other DB
1.00100.0At5g35460833509unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;FOPMO.I.H.G.S.X.
0.3133.8At1g71190843459SAG18 (SENESCENCE ASSOCIATED GENE 18)Senescence associated gene (SAG). Expression induced by ozone. Encodes a plant-specific protein of unknown function. Based on a personal communication from David Meinke (08/21/2007), this gene is not allelic to TTN4, even though this has been stated previously in a publication.O.I.H.G.S.X.
0.2930.3At4g11220826724BTI2 (VIRB2-INTERACTING PROTEIN 2)F:unknown;P:biological_process unknown;C:endoplasmic reticulum, plasma membrane;MPOFO.I.H.G.S.X.
0.2522.6At3g51520824315diacylglycerol acyltransferase familyF:diacylglycerol O-acyltransferase activity, transferase activity, transferring acyl groups other than amino-acyl groups;P:biological_process unknown;C:cellular_component unknown;MBFOPO.I.H.G.S.X.
0.2319.3At1g16180838187TMS membrane family protein / tumour differentially expressed (TDE) family proteinF:molecular_function unknown;P:unknown;C:endomembrane system, membrane;MFPOO.I.H.G.S.X.
0.157.8At5g27840832846TOPP8encodes a serine/threonine protein phosphatase expressed in expressed in roots, rosettes and flowers.O.I.H.G.S.X.
0.146.8At1g09920837524TRAF-type zinc finger-relatedF:zinc ion binding;P:biological_process unknown;C:cellular_component unknown;MOFPO.I.H.G.S.X.
0.146.8At1g11910837740aspartyl protease family proteinF:aspartic-type endopeptidase activity;P:proteolysis, response to salt stress;C:vacuole;MFOPBO.I.H.G.S.X.
0.114.1At1g21760838780FBP7 (F-BOX PROTEIN 7)This gene is predicted to encode an F-box protein that is evolutionarily conserved between Arabidopsis and other eukaryotes including S.cerevisiae and humans. It may play a role in regulating translation under conditions of temperature stress. FBP7 transcript levels are increased at high and low temperatures.O.I.H.G.S.X.
0.114.1At3g04090819564SIP1A (SMALL AND BASIC INTRINSIC PROTEIN 1A)Belongs to a family of plant aquaporins. Similar to yeast and radish aquaporins. Located on ER.O.I.H.G.S.X.
0.114.1At4g23630828463BTI1 (VIRB2-INTERACTING PROTEIN 1)F:unknown;P:biological_process unknown;C:endoplasmic reticulum, plasma membrane, vacuole;MPOFO.I.H.G.S.X.

Select a plant to compare co-expressed genes between species.
Glycine_max
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera



Back to the CoP portal site

Back to the KAGIANA project homepage