Co-expression analysis

Gene ID Zm.8864.1.A1_s_at
Gene name hypothetical protein LOC100278083
Homology with ArabidopsisSimilar to At4g13720: inosine triphosphate pyrophosphatase, putative / HAM1 family protein (HF=6e+0)
Module size 10 genes
NF 0.12
%ile 7.5

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.9599.60.94Zm.8864.1.A1_s_atBM269430hypothetical protein LOC100278083-6e+0At4g13720inosine triphosphate pyrophosphatase, putative / HAM1 family proteinO.I.H.G.S.X.
0.4658.40.95Zm.16498.1.S1_a_atAY103577.1hypothetical protein LOC100193260-1e-109At5g55190RAN3 (RAN GTPASE 3)O.I.H.G.S.X.
0.2724.60.97Zm.13856.1.S1_atAF439727.1formate tetrahyrofolate ligase-9e-58At1g50480THFS (10-FORMYLTETRAHYDROFOLATE SYNTHETASE)O.I.H.G.S.X.
0.2216.90.96Zm.19355.1.A1_atBG549786STIP1 homology and U box-containing protein 1-2e+0At3g14820carboxylesterase/ hydrolase, acting on ester bonds / lipaseO.I.H.G.S.X.
0.1811.60.97Zm.8865.1.A1_atBM267927hypothetical protein LOC100191271-3e-9At5g35460unknown proteinO.I.H.G.S.X.
0.1710.60.97Zm.17366.1.S1_s_atCK371241--1e+1At5g20060phospholipase/carboxylesterase family proteinO.I.H.G.S.X.
0.125.90.96Zm.7671.1.A1_atBM073122hypothetical protein LOC100272470-8e-2At4g00232unknown proteinO.I.H.G.S.X.
0.104.60.95Zm.1480.1.A1_atCA403094--1e+0At1g28330DYL1 (DORMANCY-ASSOCIATED PROTEIN-LIKE 1)O.I.H.G.S.X.
0.062.30.95Zm.5095.1.S1_s_atBM269118hypothetical protein LOC100192930-2e+0At4g16447unknown proteinO.I.H.G.S.X.
0.041.50.95Zm.18353.1.A1_atAY111403.1hypothetical protein LOC100280196-2e+0At1g16640transcriptional factor B3 family proteinO.I.H.G.S.X.

VF%ileCCGene IDRepr. IDGene nameFunc.EvAGI codeArabidopsis gene nameO.I.H.G.S.X.Other DB
0.3641.30.96Zm.3497.1.A1_atCF021745hypothetical protein LOC100272844-7e-31At4g31870ATGPX7 (glutathione peroxidase 7)O.I.H.G.S.X.
0.3336.00.91Zm.13483.1.S1_atCO528023Hypothetical protein LOC100192840-2e+0At3g29970germination protein-relatedO.I.H.G.S.X.
0.3336.00.98Zm.13853.1.S1_atAF272753.1kinesin heavy chain-1e-14At1g63640kinesin motor protein-relatedO.I.H.G.S.X.
0.3233.40.90Zm.4184.1.A1_atCA40421626S proteasome non-ATPase regulatory subunit 14-7e-38At5g2354026S proteasome regulatory subunit, putativeO.I.H.G.S.X.
0.3233.40.92Zm.14075.1.A1_atBG840438fiber protein Fb15-5e-1Atmg00050-O.I.H.G.S.X.
0.3131.60.91Zm.9264.1.A1_atBM267689--2e+0At5g13190-O.I.H.G.S.X.
0.3131.60.92Zm.955.1.A1_atBM339428e2 protein-2e-6At3g27100-O.I.H.G.S.X.
0.3131.60.94Zm.17965.1.A1_atCK826919--1e+0At3g32160unknown proteinO.I.H.G.S.X.
0.3131.60.97Zm.6962.1.S1_atCA404020sorbitol dehydrogenase-2e-1At5g51970sorbitol dehydrogenase, putative / L-iditol 2-dehydrogenase, putativeO.I.H.G.S.X.
0.3029.80.95Zm.6746.1.A1_atCK347370hypothetical protein LOC100279874-2e-3At3g63460WD-40 repeat family proteinO.I.H.G.S.X.
0.3029.80.90ZmAffx.1212.1.A1_atBU050629--6e-11At1g30410ATMRP13O.I.H.G.S.X.
0.2928.10.95Zm.3090.1.S1_atAY104155.1hypothetical protein LOC100192770-2e-4At4g27320universal stress protein (USP) family proteinO.I.H.G.S.X.
0.2828.10.95Zm.17599.1.A1_atCK370802protein binding protein-7e+0At5g24660LSU2 (RESPONSE TO LOW SULFUR 2)O.I.H.G.S.X.
0.2724.60.94Zm.3882.1.S1_atCF008401hypothetical protein LOC100191197-5e+0At1g07190-O.I.H.G.S.X.
0.2724.60.93Zm.1550.1.A1_atCD972755hypothetical protein LOC100194140-1e+1Atmg01020-O.I.H.G.S.X.
0.2724.60.97Zm.15542.1.S1_atCD219383--2e-2At4g29080PAP2 (PHYTOCHROME-ASSOCIATED PROTEIN 2)O.I.H.G.S.X.
0.2622.70.95Zm.8121.1.A1_atCF630483hypothetical protein LOC100276169-3e-2At1g63780IMP4O.I.H.G.S.X.
0.2622.70.97Zm.4304.1.S1_atAI834719--1e-3At3g18600DEAD/DEAH box helicase, putativeO.I.H.G.S.X.
0.2622.70.97Zm.17628.1.S1_atCN845468--6e-17At2g34560katanin, putativeO.I.H.G.S.X.


Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
12.298.6GSM320451protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
9.998.3GSM320453protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
9.398.2GSM202295Mo17xB73 immature ear tissue, biological replicate 1GSE8176Cis-transcriptional variation in maize inbred lines B73 and Mo17 leads to additive expression - Immature ear dataLink to GEO
7.897.9GSM320454protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
6.997.7GSM320452protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
6.897.6GSM202299Mo17xB73 immature ear tissue, biological replicate 2GSE8176Cis-transcriptional variation in maize inbred lines B73 and Mo17 leads to additive expression - Immature ear dataLink to GEO
6.497.5GSM206313Upper pulvinus 5 min total RNA biorep 2GSE8320Transcriptional and translational gene regulation in the maize pulvinusLink to GEO
5.497.0GSM320450protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
5.296.9GSM202292B73 immature ear tissue, biological replicate 1GSE8176Cis-transcriptional variation in maize inbred lines B73 and Mo17 leads to additive expression - Immature ear dataLink to GEO
5.296.9GSM206325Upper pulvinus 5 min polysomal RNA biorep 2GSE8320Transcriptional and translational gene regulation in the maize pulvinusLink to GEO

Inter-species module comparison

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Hordeum_vulgare
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera



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