Co-expression analysis

Gene ID Zm.8864.1.A1_s_at
Gene name hypothetical protein LOC100278083
Homology with ArabidopsisSimilar to At4g13720: inosine triphosphate pyrophosphatase, putative / HAM1 family protein (HF=6e+0)
Module size 10 genes
NF 0.12
%ile 7.5

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF %ile CC Gene ID Repr. ID Gene name Func.EvAGI codeArabidopsis gene name O.I. H.G. S.X. Other DB
0.9599.60.94Zm.8864.1.A1_s_atBM269430hypothetical protein LOC100278083-6e+0At4g13720inosine triphosphate pyrophosphatase, putative / HAM1 family proteinO.I.H.G.S.X.
0.4658.40.95Zm.16498.1.S1_a_atAY103577.1hypothetical protein LOC100193260-1e-109At5g55190RAN3 (RAN GTPASE 3)O.I.H.G.S.X.
0.2724.60.97Zm.13856.1.S1_atAF439727.1formate tetrahyrofolate ligase-9e-58At1g50480THFS (10-FORMYLTETRAHYDROFOLATE SYNTHETASE)O.I.H.G.S.X.
0.2216.90.96Zm.19355.1.A1_atBG549786STIP1 homology and U box-containing protein 1-2e+0At3g14820carboxylesterase/ hydrolase, acting on ester bonds / lipaseO.I.H.G.S.X.
0.1811.60.97Zm.8865.1.A1_atBM267927hypothetical protein LOC100191271-3e-9At5g35460unknown proteinO.I.H.G.S.X.
0.1710.60.97Zm.17366.1.S1_s_atCK371241--1e+1At5g20060phospholipase/carboxylesterase family proteinO.I.H.G.S.X.
0.125.90.96Zm.7671.1.A1_atBM073122hypothetical protein LOC100272470-8e-2At4g00232unknown proteinO.I.H.G.S.X.
0.104.60.95Zm.1480.1.A1_atCA403094--1e+0At1g28330DYL1 (DORMANCY-ASSOCIATED PROTEIN-LIKE 1)O.I.H.G.S.X.
0.062.30.95Zm.5095.1.S1_s_atBM269118hypothetical protein LOC100192930-2e+0At4g16447unknown proteinO.I.H.G.S.X.
0.041.50.95Zm.18353.1.A1_atAY111403.1hypothetical protein LOC100280196-2e+0At1g16640transcriptional factor B3 family proteinO.I.H.G.S.X.

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Specific experiments for the module

Std2 GX %ile GSM ID Assay name GSE ID Experiment title Link to GEO
12.298.6GSM320451protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
9.998.3GSM320453protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
9.398.2GSM202295Mo17xB73 immature ear tissue, biological replicate 1GSE8176Cis-transcriptional variation in maize inbred lines B73 and Mo17 leads to additive expression - Immature ear dataLink to GEO
7.897.9GSM320454protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
6.997.7GSM320452protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
6.897.6GSM202299Mo17xB73 immature ear tissue, biological replicate 2GSE8176Cis-transcriptional variation in maize inbred lines B73 and Mo17 leads to additive expression - Immature ear dataLink to GEO
6.497.5GSM206313Upper pulvinus 5 min total RNA biorep 2GSE8320Transcriptional and translational gene regulation in the maize pulvinusLink to GEO
5.497.0GSM320450protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1GSE12770Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant GenomesLink to GEO
5.296.9GSM202292B73 immature ear tissue, biological replicate 1GSE8176Cis-transcriptional variation in maize inbred lines B73 and Mo17 leads to additive expression - Immature ear dataLink to GEO
5.296.9GSM206325Upper pulvinus 5 min polysomal RNA biorep 2GSE8320Transcriptional and translational gene regulation in the maize pulvinusLink to GEO

Inter-species module comparison

A co-expression module including the barley gene, Contig1420_at, orthologous to the query gene, Zm.8864.1.A1_s_at

VF%ileGene IDRepr. IDGene NameFunc.EvAGI codeArabidopsis gene nameO.I.H.G.S.X.Other DB
0.9095.7Contig1420_atAt4g13720--3e-1At5g19875unknown proteinO.I.H.G.S.X.
0.2427.2HK06E22r_atAt4g13720--5e+0At3g43120auxin-responsive protein-relatedO.I.H.G.S.X.
0.2224.2Contig12684_atAt4g13720--4e-2At1g28590lipase, putativeO.I.H.G.S.X.
0.2122.6HVSMEg0006F05r2_x_atAt4g13720--8e-1At3g13000transcription factorO.I.H.G.S.X.
0.1919.6HW07J16u_atAt4g13720--2e-1At5g39645-O.I.H.G.S.X.
0.1818.2HVSMEa0002E06r2_s_atAt4g13720--2e-1At3g52850VSR1 (VACUOLAR SORTING RECEPTOR HOMOLOG 1)O.I.H.G.S.X.
0.1615.3Contig24019_atAt4g13720--4e+0At2g02520-O.I.H.G.S.X.
0.108.4Contig12877_atAt4g13720--1e-1At3g17800-O.I.H.G.S.X.
0.108.4HT13G05r_atAt4g13720--3e-10At3g13550FUS9 (FUSCA 9)O.I.H.G.S.X.
0.108.4HT10M15u_atAt4g13720--4e+0At1g55310SR33O.I.H.G.S.X.
0.064.8Contig2364_atAt4g13720--2e-25At3g49010ATBBC1 (ARABIDOPSIS THALIANA BREAST BASIC CONSERVED 1)O.I.H.G.S.X.
0.064.8Contig17116_atAt4g13720--2e+0At4g39260GR-RBP8O.I.H.G.S.X.
0.054.1Contig22325_atAt4g13720--1e+0At5g15290integral membrane family proteinO.I.H.G.S.X.
0.043.4Contig13542_atAt4g13720--1e-1At3g46070zinc finger (C2H2 type) family proteinO.I.H.G.S.X.

Select a plant to compare co-expressed genes between species.
Arabidopsis_thaliana
Glycine_max
Oryza_sativa
Populus_trichocarpa
Triticum_aestivum
Vitis_vinifera



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