Co-expression analysis

Gene ID	Zm.886.2.S1_at
Gene name
Homology with Arabidopsis	Similar to At2g39050: hydroxyproline-rich glycoprotein family protein (HF=5e-2)
Module size	6 genes
NF	0.51
%ile	66.6

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.61	79.5	0.96	Zm.886.2.S1_at	CK827386	-	-	5e-2	At2g39050	hydroxyproline-rich glycoprotein family protein	O.I.	H.G.	S.X.	Please select
0.73	89.9	0.96	Zm.3731.1.A1_at	BM339633	hypothetical protein LOC100194030	-	6e+0	At5g60950	COBL5 (COBRA-LIKE PROTEIN 5 PRECURSOR)	O.I.	H.G.	S.X.	Please select
0.60	77.8	0.97	Zm.9152.1.A1_at	BM267500	-	-	4e+0	At1g65484	unknown protein	O.I.	H.G.	S.X.	Please select
0.44	55.7	0.96	Zm.5172.1.A1_at	BM266341	-	-	1e-1	At1g79960	OFP14 (OVATE FAMILY PROTEIN 14)	O.I.	H.G.	S.X.	Please select
0.31	31.6	0.97	Zm.17587.1.S1_at	CK369775	hypothetical protein LOC100193716 /// hypothetical protein LOC100276274	-	5e+0	At5g67420	LBD37 (LOB DOMAIN-CONTAINING PROTEIN 37)	O.I.	H.G.	S.X.	Please select
0.27	24.6	0.97	Zm.1129.1.A1_at	BE510577	-	-	1e+0	At1g80730	ZFP1 (ZINC-FINGER PROTEIN 1)	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
7.7	97.9	GSM320452	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
6.7	97.6	GSM320449	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
6.5	97.5	GSM320450	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
6.3	97.4	GSM320453	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
6.1	97.4	GSM320451	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
5.7	97.2	GSM320447	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
5.6	97.1	GSM320454	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
5.5	97.1	GSM320448	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
5.2	96.9	GSM320455	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
4.7	96.5	GSM202311	Mo17xB73 19 day after pollination embryo tissue, biological replicate 1	GSE8179	Cis-transcriptional variation in maize inbred lines B73 and Mo17 leads to additive expression - Embryo data

Inter-species module comparison

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Triticum_aestivum

Vitis_vinifera

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