Co-expression analysis

Gene ID	Zm.8818.1.A1_at
Gene name
Homology with Arabidopsis	Similar to At2g01500: PFS2 (PRETTY FEW SEEDS 2) (HF=9e-2)
Module size	6 genes
NF	0.38
%ile	41.2

Co-expressed genes

Click gene/probe ID to show a list of genes that are co-expressed with the gene.

VF	%ile	CC	Gene ID	Repr. ID	Gene name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.53	69.1	0.98	Zm.8818.1.A1_at	BM268303	-	-	9e-2	At2g01500	PFS2 (PRETTY FEW SEEDS 2)	O.I.	H.G.	S.X.	Please select
0.50	65.7	0.98	Zm.879.1.A1_at	BM379556	hypothetical protein LOC100276616	-	7e+0	At5g35300	unknown protein	O.I.	H.G.	S.X.	Please select
0.44	55.7	0.98	Zm.9708.1.A1_at	BQ538651	DNA binding protein	-	4e-1	At4g16160	mitochondrial import inner membrane translocase subunit Tim17/Tim22/Tim23 family protein	O.I.	H.G.	S.X.	Please select
0.43	52.8	0.98	Zm.297.1.S1_at	CO527021	CMP-KDO synthetase1	-	2e-13	At1g53000	cytidylyltransferase family	O.I.	H.G.	S.X.	Please select
0.22	16.9	0.98	Zm.18265.1.A1_at	CA404918	hypothetical protein LOC100277671	-	5e+0	At3g27590	unknown protein	O.I.	H.G.	S.X.	Please select
0.21	15.5	0.98	Zm.766.1.A1_at	AI649708	-	-	1e-18	At5g64600	unknown protein	O.I.	H.G.	S.X.	Please select

Click More genes

Specific experiments for the module

Std2 GX	%ile	GSM ID	Assay name	GSE ID	Experiment title	Link to GEO
12.9	98.7	GSM320453	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
12.0	98.6	GSM320455	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
11.8	98.6	GSM320454	protocol: Cot filtration (CF) - genotype: CML69 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
11.3	98.5	GSM320451	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
9.4	98.3	GSM320452	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
9.0	98.2	GSM320450	protocol: Cot filtration (CF) - genotype: Mo17 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
7.8	97.9	GSM320448	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep2	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
7.8	97.9	GSM320449	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep3	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
7.5	97.8	GSM320447	protocol: Cot filtration (CF) - genotype: B73 maize inbred - rep1	GSE12770	Evaluation of Target Preparation Methods for Single-Feature Polymorphism Detection in Large Complex Plant Genomes
4.4	96.2	GSM202298	B73 immature ear tissue, biological replicate 2	GSE8176	Cis-transcriptional variation in maize inbred lines B73 and Mo17 leads to additive expression - Immature ear data

Inter-species module comparison

A co-expression module including the wheat gene, TaAffx.25837.1.S1_at, orthologous to the query gene, Zm.8818.1.A1_at

VF	%ile	Gene ID	Repr. ID	Gene Name	Func.	Ev	AGI code	Arabidopsis gene name	O.I.	H.G.	S.X.	Other DB
0.97	99.6	TaAffx.25837.1.S1_at	At2g01500	-	-	1e+0	At5g46320	-	O.I.	H.G.	S.X.	Please select
0.62	82.3	TaAffx.105660.1.S1_at	At2g01500	-	-	1e-3	At3g01015	-	O.I.	H.G.	S.X.	Please select
0.60	81.0	TaAffx.119995.1.S1_at	At2g01500	-	-	1e+0	At1g31335	unknown protein	O.I.	H.G.	S.X.	Please select
0.56	78.6	TaAffx.29673.1.S1_at	At2g01500	-	-	7e+0	At5g14240	-	O.I.	H.G.	S.X.	Please select
0.56	78.6	TaAffx.111311.1.S1_at	At2g01500	-	-	1e+0	At1g61940	AtTLP4 (TUBBY LIKE PROTEIN 4)	O.I.	H.G.	S.X.	Please select
0.54	75.5	TaAffx.65688.1.S1_x_at	At2g01500	-	-	2e+1	At3g02480	ABA-responsive protein-related	O.I.	H.G.	S.X.	Please select
0.52	73.7	TaAffx.107438.1.S1_at	At2g01500	-	-	1e-2	At3g26110	-	O.I.	H.G.	S.X.	Please select
0.51	73.0	TaAffx.65688.1.S1_at	At2g01500	-	-	2e+1	At3g02480	ABA-responsive protein-related	O.I.	H.G.	S.X.	Please select
0.50	72.4	TaAffx.83840.1.S1_at	At2g01500	-	-	4e+0	At1g28170	sulfotransferase family protein	O.I.	H.G.	S.X.	Please select
0.50	72.4	Ta.26652.1.A1_at	At2g01500	-	-	1e-3	At1g36050	unknown protein	O.I.	H.G.	S.X.	Please select
0.49	69.7	TaAffx.82721.1.S1_at	At2g01500	-	-	3e+1	At4g20780	calcium-binding protein, putative	O.I.	H.G.	S.X.	Please select
0.49	69.7	Ta.14468.2.S1_at	At2g01500	-	-	4e+0	At2g26120	glycine-rich protein	O.I.	H.G.	S.X.	Please select
0.47	67.9	TaAffx.78822.1.S1_at	At2g01500	-	-	1e+0	At5g01075	beta-galactosidase	O.I.	H.G.	S.X.	Please select
0.47	67.9	TaAffx.27409.1.S1_at	At2g01500	-	-	4e+0	At1g02405	proline-rich family protein	O.I.	H.G.	S.X.	Please select
0.46	66.8	Ta.19591.2.A1_a_at	At2g01500	-	-	4e+0	At5g11500	unknown protein	O.I.	H.G.	S.X.	Please select
0.45	65.2	TaAffx.51911.1.S1_at	At2g01500	-	-	3e+0	At1g78300	GRF2 (GENERAL REGULATORY FACTOR 2)	O.I.	H.G.	S.X.	Please select
0.43	62.2	TaAffx.110652.1.S1_at	At2g01500	-	-	1e-2	At2g23690	unknown protein	O.I.	H.G.	S.X.	Please select
0.41	59.6	Ta.21581.1.S1_at	At2g01500	-	-	4e+0	At2g36460	fructose-bisphosphate aldolase, putative	O.I.	H.G.	S.X.	Please select
0.41	59.6	TaAffx.24833.1.S1_at	At2g01500	-	-	7e-1	At1g68945	unknown protein	O.I.	H.G.	S.X.	Please select
0.41	59.6	TaAffx.120245.1.S1_at	At2g01500	-	-	1e-1	At4g17800	DNA-binding protein-related	O.I.	H.G.	S.X.	Please select
0.41	59.6	Ta.16453.1.S1_at	At2g01500	-	-	1e+0	At4g29650	cytidine deaminase 4 (CDA4) (desH) / cytidine aminohydrolase	O.I.	H.G.	S.X.	Please select
0.40	58.4	TaAffx.53587.2.S1_at	At2g01500	-	-	7e-2	At4g34290	SWIB complex BAF60b domain-containing protein	O.I.	H.G.	S.X.	Please select
0.39	56.1	TaAffx.113024.3.S1_at	At2g01500	-	-	3e-1	At5g26700	germin-like protein, putative	O.I.	H.G.	S.X.	Please select
0.36	51.9	TaAffx.61664.1.S1_at	At2g01500	-	-	2e-1	At1g59171	ATP binding / inositol pentakisphosphate 2-kinase	O.I.	H.G.	S.X.	Please select
0.36	51.9	TaAffx.23743.1.S1_at	At2g01500	-	-	3e-1	At2g28790	osmotin-like protein, putative	O.I.	H.G.	S.X.	Please select
0.31	42.7	TaAffx.109175.2.S1_x_at	At2g01500	-	-	1e+0	At4g29020	glycine-rich protein	O.I.	H.G.	S.X.	Please select
0.31	42.7	TaAffx.105981.1.S1_at	At2g01500	-	-	3e-1	At4g11870	unknown protein	O.I.	H.G.	S.X.	Please select
0.28	39.2	TaAffx.132656.2.S1_at	At2g01500	-	-	1e+0	At1g76500	SOB3 (SUPPRESSOR OF PHYB-4#3)	O.I.	H.G.	S.X.	Please select
0.22	27.1	Ta.6759.2.S1_x_at	At2g01500	-	-	2e+0	At5g63310	NDPK2 (NUCLEOSIDE DIPHOSPHATE KINASE 2)	O.I.	H.G.	S.X.	Please select

Select a plant to compare co-expressed genes between species.

Arabidopsis_thaliana

Glycine_max

Hordeum_vulgare

Oryza_sativa

Populus_trichocarpa

Vitis_vinifera

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